Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq20251 136 5e-27 seq20837 122 1e-22 seq19542 107 2e-18 seq18741 100 3e-16 seq20271 98.7 1e-15 >seq20251 Length=854191 Score = 136 bits (150), Expect = 5e-27 Identities = 301/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||| | ||| | || ||||| | || ||||||| ||||||| ||| Sbjct 530817 GTGGAGTTTTTGAAGAAGCCTGAGAGGTTCACTGCCGTTGGTGCCCGGATCCCCAAAGGT 530758 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || | ||| || ||||| ||||| ||| | | || ||||||||| ||| Sbjct 530757 GTTCTCCTTGTTGGTCCTCCTGGTACTGGAAAAACCTTGTTGGCAAAAGCCATCGCTGGT 530698 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||| | | | ||||| |||||||| || | Sbjct 530697 GAAGCCGGTGTACCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTTGAGATGTTCGTCG 530640 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| ||||| |||||| |||||||| || ||| ||| |||||| || || | Sbjct 530639 GTGTTGGTGCTTCAAGGGTCCGCGATCTTTTCAAAAAAGCCAAGGAAAATGCTCCCTGCA 530580 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 |||| || | ||||| || ||||| || || | |||| | | |||| |||| Sbjct 530579 TTGTTTTTGTGGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACTGGAATTGGTGG-- 530522 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || ||||||| || || || ||||||||||| || | Sbjct 530521 -AGGCAATGATGAAAGAGAACAGACGCTTAATCAGCTCCTGACGGAGATGGATGGTTTCG 530463 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACG 175651 | | | ||||| || | || |||| || || || | | ||||| ||||| || Sbjct 530462 AGGGTAACACTGGTGTTATCGTAGTTGCTGCTACCAACAGAGCAGATATTCTTGACTCCG 530403 Query 175652 CCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 || | || | || || |||||||| || Sbjct 530402 CCTTGCTGAGACCTGGGCGTTTTGACCG 530375 >seq20837 Length=368380 Score = 122 bits (134), Expect = 1e-22 Identities = 198/281 (70%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 ||| |||||||| ||||| ||| | || |||| | || || ||| | || || || Sbjct 291387 GCCTGGTACGGGTAAGACTCTCTTGGCTAGAGCGGTGGCTGGAGAAGCTGGAGTACCGTT 291446 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || || | || | | ||||||||| | ||||||||||| ||||| || || Sbjct 291447 CTTCTCTTGTGCGGCTTCTGAGTTTGTGGAGCTTTTTGTTGGTGTTGGTGCGTCTAGAGT 291506 Query 175434 TCGCGATCTCTTTGAAATCGCCC--GCGAAAATCAACCATGTATTGTCTTCATTGATGAG 175491 | | ||| | ||||| | || |||||| || |||||||| |||||||||||| Sbjct 291507 TAGGGATTTGTTTGAGAAGGCTAAGGCGAAAGCT--CCTTGTATTGTTTTCATTGATGAG 291564 Query 175492 ATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAG 175549 |||||||| ||||| | ||| | | ||||| ||| | | || |||||| ||||| | Sbjct 291565 ATTGATGCTGTGGGTAGGCAGAGAGGGGCTGGGATGGGAGG--AGGAAATGATGAGAGGG 291622 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 |||| || |||||||| | | || ||||||||||| ||| Sbjct 291623 AACAGACGATTAATCAGTTGTTGACTGAGATGGATGGGTTT 291663 >seq19542 Length=58103 Score = 107 bits (118), Expect = 2e-18 Identities = 194/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || ||||| ||||| || | || |||| | || || ||| || || || ||| Sbjct 19222 CCTGGAACGGGTAAGACGCTTTTGGCTAGAGCTGTGGCTGGAGAAGCAGGAGTGCCGTTC 19281 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||| |||| | | ||||| ||| | ||||||||||| ||||| |||||| Sbjct 19282 TTTTCGTGTGCTGCTTCTGAGTTTGTTGAGCTTTTTGTTGGTGTTGGTGCTTCTAGGGTT 19341 Query 175435 CGCGATCTCTTTGAAATCGCCC--GCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||| | ||||| | || |||||| || |||||||| || || ||||| | Sbjct 19342 AGGGATTTATTTGAGAAGGCGAAGGCGAAAGCT--CCTTGTATTGTTTTTATAGATGAAA 19399 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGGT--GGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||| || || | |||| | | |||||| || | | | || || |||||||| Sbjct 19400 TTGATGCTGTTGGTAGGCAAAGAGGAGCTGGTATGGGAGGTGGG--AACGATGAGAGAGA 19457 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || |||||||| || | || ||||||||||||||| Sbjct 19458 ACAGACTATTAATCAGCTTTTGACTGAGATGGATGGCTTT 19497 >seq18741 Length=287810 Score = 100 bits (110), Expect = 3e-16 Identities = 224/335 (67%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || || || || | || ||| || || |||||| | ||| || ||| Sbjct 94973 CCTGGTACCGGGAAAACGCTTTTGGCGAAAGCTATTGCTGGTGAAGCTGGTGTGCCTTTC 95032 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||||| | | ||||| ||||||||||||||||| |||||| || || Sbjct 95033 TTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCCTCGAGAGTC 95092 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| || | | ||| ||||| || || |||||||| | ||||| ||| Sbjct 95093 CGTGATCTTTTCAAGAAAGCCAAGGAAAACGCTCCTTGCATTGTCTTTGTGGATGAAATT 95152 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAA 175551 ||||| || || | |||| | | | || |||| || ||||| || |||||| Sbjct 95153 GATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---GGAGGTAATGATGAAAGAGAA 95209 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611 || || | ||||| || || || ||||||||||| ||||| | | || || ||| | Sbjct 95210 CAGACTCTGAATCAGCTTCTAACTGAGATGGATGGATTTGAAGGTAATACCGGTATTATC 95269 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || |||| || || || | | || || ||||| Sbjct 95270 GTGGTTGCTGCAACCAACAGAGCTGACATTCTTGA 95304 >seq20271 Length=78964 Score = 98.7 bits (108), Expect = 1e-15 Identities = 243/363 (67%), Gaps = 8/363 (2%) Strand=Plus/Plus Query 177564 AAACTGCCTC-ACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTT 177622 ||||| |||| || | ||||| |||| | || ||||| || || ||||| | | || | Sbjct 42615 AAACT-CCTCGACGGTGTGTGACTCCTCAGTTGCGACCACGTAATCATCTGGTTTGTCCT 42673 Query 177623 GTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAG 177682 | || |||||||||||||| || || || |||||| || ||||||||||| | | Sbjct 42674 GCTGGAGCATGAGCCACATAGCCTCCACGTAGTCCCCTGCGAATCCCCAGTCTCTTGACG 42733 Query 177683 CGTTGAGGTTACCGAGTTCAAGGAACTCTCTCT-CA--CCTTTCACAATTTGTTTGACGC 177739 | | | ||| ||||| | || || ||| || || | || | | | Sbjct 42734 CCTGTATGTTTCCGAGG---AAGAGCTTGGTCTGCAGTCCGACCTTGATCCTTCCCAAGG 42790 Query 177740 CATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGA 177799 | ||| |||||| || ||||||| | ||||| | ||||| ||||||||||| | Sbjct 42791 CCCGAGTTATCTTCCGAGTCACAAAGTTCTCGCCTCGGCGGGGTGACTCGTGGTTGAACA 42850 Query 177800 GGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAG 177859 |||| || ||| || |||| || || | ||||||||| || | | |||||||| Sbjct 42851 GGATCCCATTGCATGCGTACAGCCCGTATGCTTCTCGGTAGTTGACGGTGTACCAGTGAG 42910 Query 177860 CGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTG 177919 |||| |||||||| | ||||| |||| || | ||||| || ||| | ||| | Sbjct 42911 CGGCGCATTTGGAGGCAGCATAGGGAGATCTCGGATGAAAGGGAGTGGTCTCTGATTGCG 42970 Query 177920 GAG 177922 ||| Sbjct 42971 GAG 42973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596410338288160