Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq17269 625 3e-174 seq20510 551 6e-152 seq19338 370 1e-97 >seq17269 Length=4150 Score = 625 bits (692), Expect = 3e-174 Identities = 735/994 (74%), Gaps = 0/994 (0%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| | ||| | || ||||| | || ||||| || | || ||||||||| | Sbjct 2741 CTTCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 2800 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCC 165887 |||||| || || | ||| | |||||| | || || |||| ||||| |||||||| Sbjct 2801 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 2860 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 || || || || || || || |||||||| || |||| ||||| | || || ||||| Sbjct 2861 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 2920 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 || || || ||||| || |||| |||| || |||||| | || || || || || Sbjct 2921 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 2980 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 ||||||||| ||||| |||| |||||||| || || |||||||||| |||| |||| Sbjct 2981 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGT 3040 Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127 | ||||| | |||| | | || |||||||||||||||||||| || ||| Sbjct 3041 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 3100 Query 166128 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGC 166187 ||| ||||||||||| ||||| |||||| || ||||| || || || ||||| | ||| Sbjct 3101 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 3160 Query 166188 AGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 166247 || ||| | | || || | |||||||| ||||| ||||||| ||||| || ||||| Sbjct 3161 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 3220 Query 166248 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 166307 ||| || || ||||||| ||| | || ||||| ||||||||||| ||||| ||||| || Sbjct 3221 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 3280 Query 166308 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 166367 || || ||| | || || ||||| ||||| || ||| | ||||||||||||||||| Sbjct 3281 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACGG 3340 Query 166368 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 166427 ||||| |||||| | | | || || || || |||| ||||| || | || Sbjct 3341 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 3400 Query 166428 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 166487 ||||| ||||| |||||||||||||| |||||||| ||||| ||||| ||||| || || Sbjct 3401 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 3460 Query 166488 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 166547 || |||||||||||||| ||| |||||||| || || || || || |||||| | || Sbjct 3461 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 3520 Query 166548 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 166607 || ||||| || || || || ||||| || || | || | || ||||| ||||| Sbjct 3521 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 3580 Query 166608 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 166667 ||| || |||||||| |||||||| || | ||||| |||| || ||||| | || || Sbjct 3581 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 3640 Query 166668 CTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGC 166727 ||||| ||| || ||||||| ||| || |||||||||||||||||||| ||||| || Sbjct 3641 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 3700 Query 166728 ACACAACTTCCCCCTCGACCTCGCTGCTGCTGAG 166761 ||||||||||| || ||||| ||||||| |||| Sbjct 3701 TCACAACTTCCCGCTAGACCTAGCTGCTGTTGAG 3734 >seq20510 Length=252746 Score = 551 bits (610), Expect = 6e-152 Identities = 737/1020 (72%), Gaps = 6/1020 (1%) Strand=Plus/Plus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | ||||||||| | ||||| || || |||||||| || |||||||| Sbjct 62277 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 62336 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | || ||||| ||| ||| | ||| | || |||||| | || || || || || Sbjct 62337 CTATTGCTCTTTCCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 62396 Query 167134 GTCACGAGTTGGTATACTCATGGACTCGC--GTCCAGTTATCTTGAGGGTGCGAACTTTC 167191 || || ||||||||||||||| | || || | ||| | || ||| || ||| Sbjct 62397 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCC--TATTTAGAAGGTTGCAATTTTT 62454 Query 167192 TTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGG 167251 | || || |||||| |||||| || || | | | |||||||| | | || |||| Sbjct 62455 TAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGG 62514 Query 167252 GTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTG 167311 |||||||| | ||||| ||||| | ||| ||| | || || || |||||||||| Sbjct 62515 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTG 62574 Query 167312 TGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTC 167371 | || |||||||| || || || | || ||||| ||| | || || ||||||||||||| Sbjct 62575 TTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTC 62634 Query 167372 GC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTC 167430 | ||| | | | || || || ||||| || || ||||||||||| |||||||| || Sbjct 62635 GATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 62693 Query 167431 GTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTC 167490 ||| || || || | ||||| || |||||| | ||||||||||| || || Sbjct 62694 GTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTT 62753 Query 167491 GGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTG 167550 || || || || || || |||||| ||||||| |||||||||| || || |||||| || Sbjct 62754 GGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTG 62813 Query 167551 AATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATC 167610 || ||||||||||||||||| || || ||| | ||||| | || |||| | || || Sbjct 62814 AACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATT 62873 Query 167611 CATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAG 167670 ||||||| ||| ||||| |||||||| | |||||||||||| ||||| || || Sbjct 62874 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 62933 Query 167671 GCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGG 167730 || || | | ||||| | ||||| |||||||||||||| || || ||||| || ||| Sbjct 62934 GCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 62993 Query 167731 TCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTC 167790 || || ||||| || ||||||| ||| ||||| ||| | ||||||||||||||||| Sbjct 62994 TCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 63053 Query 167791 GTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTT 167850 || || || | || | |||| | |||| | | ||||| ||| | || || Sbjct 63054 GTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTA 63113 Query 167851 CGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACT 167910 ||||| || || |||||||| || || ||| | || ||||| ||||| || ||||| ||| Sbjct 63114 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACT 63173 Query 167911 TTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGAT 167970 |||||||||||||| || ||| | || |||||| |||| || ||| | || || ||| Sbjct 63174 TTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGAT 63233 Query 167971 CAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 || |||||||| ||| || | ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 63234 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 63293 Score = 159 bits (176), Expect = 4e-34 Identities = 136/168 (81%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 166594 ACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 166653 || ||||| |||||||| || |||||||| |||||||| || || ||||| |||| || Sbjct 30732 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTCGTTGATAGTCAAGGA 30673 Query 166654 CGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATG 166713 ||||| | || || ||||| ||| || ||||||| ||| || ||||||||||||||| Sbjct 30672 CGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 30613 Query 166714 CATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCTGCTGAG 166761 ||||| ||||| || ||||||||||| || ||||| ||||||| |||| Sbjct 30612 CATGAACGTAATGCTCACAACTTCCCGCTAGACCTAGCTGCTGTTGAG 30565 >seq19338 Length=76300 Score = 370 bits (410), Expect = 1e-97 Identities = 598/856 (70%), Gaps = 3/856 (0%) Strand=Plus/Plus Query 167176 GAGGGTGCGAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCT 167235 || ||| | || ||| | ||||| |||||| |||||| || || | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 167236 TTACTTCTTCTATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGG 167295 || | | || |||||||||||| | ||||| ||||| | ||| ||| | || Sbjct 38377 TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGC 38436 Query 167296 GGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTC-ATGCTTCG 167354 || | || | || ||| || ||||||| || || || | || ||||| ||| | || Sbjct 38437 GGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACG 38496 Query 167355 ACAGTTTGAACTTGCTCGCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGG 167414 || |||||||||||||| || | || || || ||||| || || |||||||| Sbjct 38497 TCAATTTGAACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGG 38556 Query 167415 TCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTT 167474 ||| |||||||| || ||| | || || | ||||| || |||||| | ||||| Sbjct 38557 TCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGTT 38616 Query 167475 CTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATT 167534 |||||| || || || || || || | || |||||| ||||||| ||||||| || Sbjct 38617 CTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCAAGGGTT 38676 Query 167535 CCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGC 167594 || || |||||| |||| ||||||||||||||||| || || ||| | |||| | || Sbjct 38677 TCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGCGGC 38736 Query 167595 ATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCA 167654 |||| | || || ||||||| ||| ||| | |||||||| | | |||||||||| Sbjct 38737 TCTGCTATGCGCTATTCATGGTGCTACTGTA-AAAATACTTTATTTAAAGATGGTGATGG 38795 Query 167655 AGCAAACACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTAC 167714 ||||| || || | || | | ||||| | |||||| |||||||||||||| || Sbjct 38796 TGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGGTCAC 38855 Query 167715 AGCAAACCGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCA 167774 || |||| || ||||| || ||||| || |||||| ||| || | ||| || Sbjct 38856 CGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGTAACA 38915 Query 167775 TTTCTTTATGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGG 167834 || |||||||||||| || || || || | | || | |||| | | || Sbjct 38916 TTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAGTCGG 38975 Query 167835 TCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGA 167894 ||| ||| | || || | | | || || |||||||| || || || | || ||||| || Sbjct 38976 TCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGGAAGA 39035 Query 167895 TCCAGAGTTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATG 167954 ||| || ||||| |||||||||||| |||| || ||| | || |||||| |||| || || Sbjct 39036 TCCGGAATTTGAGACTTTCTATACT-AAAATATTCTTTTAAACGAAGGTATTCGCGCTTG 39094 Query 167955 GTTAGCACCTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACG 168014 | | || || ||||| |||||||| ||| || | ||||| ||||| ||||| ||||| Sbjct 39095 GATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACG 39154 Query 168015 AGGCAACGCACTATAA 168030 | ||||| || ||| Sbjct 39155 TGAAAACGCTCTTTAA 39170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561098167830800