Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq17269 542 8e-150 seq20510 143 8e-30 >seq17269 Length=4150 Score = 542 bits (600), Expect = 8e-150 Identities = 706/974 (72%), Gaps = 2/974 (0%) Strand=Plus/Plus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313 ||| | || |||||||| | |||||||| || || | ||||| || | ||| ||| | Sbjct 2763 ACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 2821 Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373 ||| || | |||||||||||| || ||| || || || || || || ||||| || Sbjct 2822 CGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 2881 Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433 || ||||| || |||| || || | || || ||||| || || ||||| ||| | | Sbjct 2882 TCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTAT 2941 Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493 ||| | | || || || | || || ||||| || ||||||||||| | |||| Sbjct 2942 TCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGA 3001 Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553 ||||||||| ||||| || ||||| | |||| | || | ||||| | |||| || Sbjct 3002 TGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT 3061 Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 | ||| ||||| || |||||||||||||| | || || || ||| | || ||||| Sbjct 3062 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 3121 Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTT 41673 |||||| || || |||||||| || ||||| |||||||| ||| | | || || | Sbjct 3122 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAAT 3181 Query 41674 TGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACAT 41733 ||| || || ||||||||||| |||||| | || || || || || ||||||| || Sbjct 3182 TGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTAT 3241 Query 41734 GCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGC 41793 | | || ||||||||||||||||| ||||||||||| || ||||||||| | ||||| || Sbjct 3242 GATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGC 3301 Query 41794 CGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACT 41853 || ||||| || || | || ||||||||||||| | |||| || || | Sbjct 3302 TGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTT 3361 Query 41854 CATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGA 41913 || | || || || ||| | | || || | ||||||| || |||||||| || Sbjct 3362 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGA 3421 Query 41914 AGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGC 41973 ||| |||||||| ||||| ||||||||||| |||||||| || | |||||||||||||| Sbjct 3422 AGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGC 3481 Query 41974 TAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTAT 42033 ||| || || ||||| ||| | | |||||||| | || || ||||| || |||||||| Sbjct 3482 TAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTAT 3541 Query 42034 TTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAA 42093 ||||||| |||| | || | ||| |||||||||||| | ||||||||||| || || Sbjct 3542 TTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAA 3601 Query 42094 CCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCG 42153 |||||| | | | | | | |||| || || || || |||||||| ||| ||||||| Sbjct 3602 CCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCG 3661 Query 42154 TGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCT 42213 ||| |||||||| | || || |||||||| || || || |||||||||||||| ||||| Sbjct 3662 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTAGACCT 3721 Query 42214 TGCATCCGTGGAGG 42227 || | || |||| Sbjct 3722 AGCTGCTGTTGAGG 3735 >seq20510 Length=252746 Score = 143 bits (158), Expect = 8e-30 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 42029 GGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAAC 42088 |||||||||||| |||| | || | ||| |||||||||||| | ||||||||||| Sbjct 30762 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAAT 30703 Query 42089 TTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTT 42148 || |||||||| | | | | | | |||| || || || || |||||||| ||| || Sbjct 30702 TTCAACCAATCAGTCGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATT 30643 Query 42149 AACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTT 42208 |||||||| |||||||| | || || |||||||| || || || |||||||||||||| Sbjct 30642 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTA 30583 Query 42209 GACCTTGCATCCGTGGAGG 42227 ||||| || | || |||| Sbjct 30582 GACCTAGCTGCTGTTGAGG 30564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146177317926328