Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq17269 562 4e-155 seq20510 131 2e-25 >seq17269 Length=4150 Score = 562 bits (622), Expect = 4e-155 Identities = 725/998 (73%), Gaps = 12/998 (1%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 |||| | ||| ||||| |||| || || | || | || ||||| |||||| | | Sbjct 2743 TCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGA 2802 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||| ||||||||||| |||| Sbjct 2803 TGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTC 2862 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| |||||||||||||||||||| || |||| ||| | | || || ||||| | Sbjct 2863 CAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATA 2922 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | || || ||||| || | |||| ||| || |||||| | || || || || || | Sbjct 2923 TTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCT 2982 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| | ||||||| ||| | |||||||||||||||| |||| | || Sbjct 2983 GGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGTTC 3042 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326 | ||||| | | || | ||| | | | |||||| ||||||||||| || || Sbjct 3043 TACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 3099 Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386 |||| || |||||||||||||| ||||||||| || || || || | ||||| | Sbjct 3100 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 3159 Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 |||| ||| | | || || | |||||||| ||| ||||||| |||||||| || | Sbjct 3160 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 3219 Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506 ||||||||||||| |||| |||| | || ||||| || || ||||| || |||||||||| Sbjct 3220 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 3279 Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566 | || |||||| | || ||||| ||||| ||||| || || || || ||||||||||| Sbjct 3280 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACG 3339 Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626 |||| ||||| || ||| | ||| | ||||| || || | || ||| || | | Sbjct 3340 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 3399 Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686 |||||| ||||| ||||||||||||||||| |||||||| |||||||| || || || | Sbjct 3400 GTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 3459 Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746 | || | |||||||| ||||| |||||||| || | | | || |||||| | | Sbjct 3460 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 3519 Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806 | || ||||| || || | || ||| |||||| | ||| | || ||||| |||| Sbjct 3520 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 3579 Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCC 155863 |||| || |||||||| |||||||| || ||||| || |||| || || || Sbjct 3580 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGA---TAGTCAAGGACGTGTTATTA 3636 Query 155864 CTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTA 155923 ||| ||||| || ||| ||||||| ||| |||||||||||||| ||||| || |||| Sbjct 3637 ATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 3696 Query 155924 ACGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 155961 | |||||||||||||| || ||||| ||||||| |||| Sbjct 3697 ATGCTCACAACTTCCCGCTAGACCTAGCTGCTGTTGAG 3734 >seq20510 Length=252746 Score = 131 bits (144), Expect = 2e-25 Identities = 143/189 (76%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 155776 ACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 155835 |||||| | ||| | || ||||| |||||||| || |||||||| |||||||| || Sbjct 30750 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 30691 Query 155836 GTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCT 155892 || || || |||| || || || ||| ||||| || ||| ||||||| ||| Sbjct 30690 GTCGTTGA---TAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 30634 Query 155893 GGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCT 155952 |||||||||||||| ||||| || ||||| |||||||||||||| || ||||| ||| Sbjct 30633 AACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTAGACCTAGCT 30574 Query 155953 GCTGCTGAG 155961 |||| |||| Sbjct 30573 GCTGTTGAG 30565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584679070932920