Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq17269 533 4e-147 seq20510 132 1e-26 >seq17269 Length=4150 Score = 533 bits (590), Expect = 4e-147 Identities = 714/993 (72%), Gaps = 0/993 (0%) Strand=Plus/Minus Query 40523 CTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCAT 40582 |||| ||| ||||| |||||| || ||||||||||| ||||| || ||||| |||||||| Sbjct 3734 CTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 3675 Query 40583 ACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTC 40642 ||| || | | ||||| || ||||||||||||| ||| || || | | || Sbjct 3674 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 3615 Query 40643 TACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCAT 40702 |||||||| ||||| || || |||||||| ||||| |||||||||||| ||||| | Sbjct 3614 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAA 3555 Query 40703 GGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCT 40762 | |||| ||| || || | ||||| |||| | | ||||| |||| | ||| Sbjct 3554 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 3495 Query 40763 ATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGAT 40822 ||||||||| ||||||||| || || | || ||||| |||||||| |||||||| || Sbjct 3494 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAAT 3435 Query 40823 GTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGT 40882 ||| ||||| || |||| ||||| || | || || | || |||||| |||| || Sbjct 3434 GTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 3375 Query 40883 GGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACC 40942 ||| |||| || | ||||| || | | |||||||||||| ||| | | || Sbjct 3374 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTAAATAGGGAGCC 3315 Query 40943 ACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGC 41002 || || || || || || || | ||| || ||||||||||| ||||||||||| || || Sbjct 3314 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 3255 Query 41003 TTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAA 41062 ||||| |||| ||| |||||||| || ||| |||||||| ||||||||||||||| || Sbjct 3254 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 3195 Query 41063 AGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGT 41122 | || ||||| | ||| || | ||||| ||||| ||| |||| | ||||||| Sbjct 3194 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGA 3135 Query 41123 GTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACC 41182 ||||| ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 3134 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 3075 Query 41183 AGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTT 41242 || ||||| || | ||||||||| | ||||| |||| ||| || || || || Sbjct 3074 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCATT 3015 Query 41243 GTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGC 41302 ||||||||| || || | | | ||||||||||| ||||| ||||| | || || || Sbjct 3014 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGC 2955 Query 41303 GTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGA 41362 ||| | |||| | || || || ||||||||||| ||||| | | || || || Sbjct 2954 TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 2895 Query 41363 AACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 ||| || ||||| || ||||| |||||||| || || || || || || ||||| || || Sbjct 2894 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 2835 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 | | || || || | ||| | || ||||| | ||||||||||| || | ||| || Sbjct 2834 AACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 2775 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || || || |||||||| | ||||||||| || Sbjct 2774 ACGATTTTCAGTGCTAGTTATCCAGTTACAGAA 2742 >seq20510 Length=252746 Score = 132 bits (146), Expect = 1e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 40523 CTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCAT 40582 |||| ||| ||||| |||||| || ||||||||||| ||||| || ||||| |||||||| Sbjct 30565 CTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 30624 Query 40583 ACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTC 40642 ||| || | | ||||| || ||||||||||||| ||| || || | | || Sbjct 30625 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 30684 Query 40643 TACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCAT 40702 || ||||| ||||| || || |||||||| ||||| |||||||||||| ||||| | Sbjct 30685 AACGACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAA 30744 Query 40703 GGAGGTAAGCCATATGCC 40720 | |||| ||| || || Sbjct 30745 AGCAGTAAACCAAATACC 30762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143665955005638