Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq17269 598 5e-166 seq20510 143 3e-29 >seq17269 Length=4150 Score = 598 bits (662), Expect = 5e-166 Identities = 724/982 (74%), Gaps = 18/982 (2%) Strand=Plus/Minus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| || |||||||||||||| ||||| || ||||||||||| Sbjct 3737 AGCCTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 3678 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 3677 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 3621 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | Sbjct 3620 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 3561 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 3560 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 3501 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | || ||||||||| ||||| ||||||||||| || || || || || |||||||| Sbjct 3500 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 3441 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| ||||||||||| ||||| ||||||| | || || || | Sbjct 3440 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 3381 Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765 || || ||||| ||||| | | |||||| || | |||||||||||||||||||| || Sbjct 3380 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTAAATAG 3321 Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 || || ||||||||||| ||||| || | ||| || |||||||||||||| |||||||| Sbjct 3320 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 3261 Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885 ||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | || Sbjct 3260 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 3201 Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945 ||| ||| |||||||| | || |||| |||||| ||||| || || | || || Sbjct 3200 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 3141 Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005 ||| || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| Sbjct 3140 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 3081 Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062 |||||| | | | ||| | || | | ||||| | || | |||| |||| Sbjct 3080 ACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG 3024 Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122 |||||||| || | ||| ||||| | | ||| ||||||||||| || || || || | Sbjct 3023 ACCACCATTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAA 2964 Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182 ||| || || ||| |||||| || ||||| ||||| || ||||| ||||| | || Sbjct 2963 ACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAG 2904 Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242 || || | ||||||||| | |||||||| ||||| |||||||| || ||||||||||| Sbjct 2903 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGC 2844 Query 68243 AATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCA 68299 || || || | |||| ||| | | ||| ||| |||||||| ||||| ||||| Sbjct 2843 GATAATAAAAACGGAAGT---TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 2787 Query 68300 ACCAACATAGATGCGATTGTCA 68321 |||| || | ||||| ||| Sbjct 2786 TCCAATGTAAAGACGATTTTCA 2765 >seq20510 Length=252746 Score = 143 bits (158), Expect = 3e-29 Identities = 153/201 (76%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| || |||||||||||||| ||||| || ||||||||||| Sbjct 30562 AGCCTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 30621 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT-- 67466 ||| ||||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 30622 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 30678 Query 67467 -GCGTCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 |||||||| ||||||||||| |||||||| || |||||||| |||||||| | Sbjct 30679 ACTATCAACGACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 30738 Query 67526 ACCCATTGCAGTGAACCAGAT 67546 ||| | ||||| ||||| || Sbjct 30739 ACCTAAAGCAGTAAACCAAAT 30759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566795846358120