Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq17269 672 0.0 seq20510 603 1e-167 seq19338 439 3e-118 seq18477 84.2 3e-11 seq19441 82.4 9e-11 >seq17269 Length=4150 Score = 672 bits (744), Expect = 0.0 Identities = 747/994 (75%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 67833 CTCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCAT 67892 |||| ||||||| ||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct 3734 CTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 3675 Query 67893 ACCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATC 67952 ||| | ||| ||||| | || || ||||| ||| | ||| || |||||| Sbjct 3674 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 3615 Query 67953 AAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAG 68012 || | || |||||||| ||||||||||| |||||||| ||||| || |||| ||| | Sbjct 3614 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAA 3555 Query 68013 TGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGA 68072 ||||| ||||| ||||| || || ||||| || || | |||||| || | ||||| || Sbjct 3554 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 3495 Query 68073 GTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAAT 68132 |||||||| ||||| |||||||||| || || || || || || ||||| ||||| Sbjct 3494 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAAT 3435 Query 68133 GTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGT 68192 ||||||||| ||||||||||||||||| ||||||| | || || ||| |||| || Sbjct 3434 GTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 3375 Query 68193 GGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCC 68252 |||||| | | || |||||| |||| |||||| ||||| ||||| || || || || Sbjct 3374 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCGTGCATAGCACTAAATAGGGAGCC 3315 Query 68253 ACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 68312 || ||||| ||||| || || | ||| || || |||||||| || ||||||||||| || Sbjct 3314 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 3255 Query 68313 TTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAA 68372 ||||| || | ||| |||||||||||||||| || || |||||||| | ||||| || Sbjct 3254 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 3195 Query 68373 CGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGA 68432 |||||||| | || |||| || ||| || || | || ||||||||||| || || Sbjct 3194 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGA 3135 Query 68433 GTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCC 68492 ||||||||| ||||||||||||||||| ||||| | ||||||||| ||||| || Sbjct 3134 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 3075 Query 68493 CATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATT 68552 ||| || | | ||||| | ||||| | | | |||| ||||||||||||| Sbjct 3074 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCATT 3015 Query 68553 GTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGC 68612 ||| | ||| ||||||| || ||| |||||||| || || ||||| || | |||||| || Sbjct 3014 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGC 2955 Query 68613 ATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGC 68672 ||| |||||| || ||||| ||||| || ||||| || || ||||| || |||| Sbjct 2954 TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 2895 Query 68673 AACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA 68732 ||||||||||||||||||||| || || || || |||||||| ||||| |||| || || Sbjct 2894 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 2835 Query 68733 ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAA 68791 | | ||||| | ||| || ||||||||||||| || || ||||| |||| ||||| Sbjct 2834 AACGGAAGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCAAACCATCCAATGTAAA 2776 Query 68792 GGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 | || || || ||| ||| | ||| | ||||| Sbjct 2775 GACGATTTTCAGTGCTAGTTATCCAGTTACAGAA 2742 >seq20510 Length=252746 Score = 603 bits (668), Expect = 1e-167 Identities = 742/1010 (73%), Gaps = 8/1010 (1%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || | Sbjct 63294 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 63235 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| || |||| |||||| || || ||||| || || || |||| Sbjct 63234 GATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGA 63175 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || ||||| || |||||||| |||| Sbjct 63174 AAGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 63115 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| | ||| ||||| | | || | | ||| |||| | ||| | || || | Sbjct 63114 GTAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTA 63055 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || | Sbjct 63054 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTG 62995 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| || || |||||||| ||||||||||| ||||||| | || || | Sbjct 62994 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAG 62935 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| |||||||||||| | | |||||| ||||| ||| |||||| Sbjct 62934 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 62875 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | |||| || | ||||| | ||| || || |||||||||||||| |||| Sbjct 62874 GAATAGCGCATAGCAGAGCCGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGT 62815 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| ||||| ||||| |||||||| | ||||| | ||||||||| || || | || | Sbjct 62814 TCAATGTCCAATTATGAAATCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 62755 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| |||||||| || || || || ||||||||| || Sbjct 62754 CAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGAAAGACAGAAA 62695 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 |||||||||| || ||||||||||| || || ||||| || || || | | || ||| Sbjct 62694 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGAT 62636 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || |||||||| || || | ||| ||||| |||| |||||||| |||||||| || Sbjct 62635 CGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCA 62576 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| ||| || || || | ||| ||| || ||||| || || | |||||| Sbjct 62575 ACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 62516 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| |||| | | |||||| | | | || |||||| || || || || || || Sbjct 62515 CCCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTT 62456 Query 67425 AGAAAATTAGCACCCTCAAGAT---AACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTG 67481 | |||||| ||| || | || ||||| || | ||| ||||| ||||| || Sbjct 62455 AAAAAATTGCAACCTTCTAAATAGGAACTA---GCCAATCCATGAGTATACCATGAAGTT 62399 Query 67482 ACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGT 67541 ||||| || ||||| || | ||| || || | || | ||| ||| ||||| || | | Sbjct 62398 ACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGCACACGGAAAGAGCAAT 62339 Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 || ||||||||||| ||||| || ||||| || | | ||||||||| Sbjct 62338 AGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATC 62289 Score = 154 bits (170), Expect = 2e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 67833 CTCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCAT 67892 |||| ||||||| ||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct 30565 CTCAACAGCAGCTAGGTCTAGCGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 30624 Query 67893 ACCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATC 67952 ||| | ||| ||||| | || || ||||| ||| | ||| || |||||| Sbjct 30625 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 30684 Query 67953 AAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAG 68012 || || || |||||||| ||||||||||| |||||||| ||||| || |||| ||| | Sbjct 30685 AACGACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAA 30744 Query 68013 TGCAGTGAACCAGATACC 68030 ||||| ||||| ||||| Sbjct 30745 AGCAGTAAACCAAATACC 30762 >seq19338 Length=76300 Score = 439 bits (486), Expect = 3e-118 Identities = 616/858 (72%), Gaps = 5/858 (1%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || |||| || ||||| || || ||||||| || ||||||||| || | Sbjct 39171 ATTAAAGAGCGTTTTCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 39112 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || || | ||| || |||| |||||| || || ||||| || || || |||| Sbjct 39111 GATCTTGAGCCGCAATCCAAGCGCGAATACCTTCGTTTAAAAGAATATT-TTAGTATAGA 39053 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | || || ||||| || |||||||| | | Sbjct 39052 AAGTCTCAAATTCCGGATCTTCCGCTGCACGAATTTCCTGGGAAACGAAGTCATAGGGAT 38993 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| | ||| ||||| | | || | | ||| || | | ||| || || | Sbjct 38992 GTAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCAATAAACCTGGTACCGGTA 38933 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| ||||||||| |||| |||| | ||||||| ||| ||| |||||||| || | Sbjct 38932 CAAATAACATAAAGGAATGTTACCAACACTTATTGGAAAAAGCAGCCCCAAAGATTTGTG 38873 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| ||| |||| || || |||||||| ||||||||||| ||||||| | || || | Sbjct 38872 ACCAAAAGTGGTTAGCGGTGACCATTGAATAAGTTTCTTCTGCTTGAGTTGGGTTAAAAG 38813 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 ||| || ||||| |||||||||| | | | |||||| | ||| ||| |||||| Sbjct 38812 TACGGAATGTATTTGCACCATCACCATCTTTAAATAAAGTATTTT-TACAGTAGCACCAT 38754 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | |||| || | |||| | ||| || || |||||||||||||| |||| Sbjct 38753 GAATAGCGCATAGCAGAGCCGCGTCCAGTACACCGGCGACTCCCATCATATGAAATGGGT 38694 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| ||||| ||||| || ||||| | ||||| | ||||||||| | || | || | Sbjct 38693 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATAAAGCCGCTACAC 38634 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| |||||||| || || || || ||||||| | || Sbjct 38633 CAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATACATTAGAAAGAAAGAAA 38574 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 |||||||||| || ||||||||||| || || ||||| || || || | | || || Sbjct 38573 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACGGAT 38515 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCAT-GAAACCAATTAGAGCGAAAGCCCCGTGGAGCGC 67303 || || |||||||| || || | ||| ||||| |||| |||||||| ||||||| || Sbjct 38514 CGAGCAAGTTCAAATTGACGTAACATAAAAACCTATTAATGCGAAAGCACCGTGGACAGC 38455 Query 67304 CACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGG 67363 ||| ||| || | || || | ||| ||| || ||||| || || | ||||| Sbjct 38454 AACATAATCGCACATACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGG 38395 Query 67364 ACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGT 67423 |||||| |||| | | |||||| | | | || |||||| || | || || || || Sbjct 38394 ACCCCACAGTAACAACAAAGAATGCGCTAAAATATTAGCAGGAGTAAAAACTGCAGCAGT 38335 Query 67424 GAGAAAATTAGCACCCTC 67441 | |||||| | ||| || Sbjct 38334 TAAAAAATTGGAACCTTC 38317 >seq18477 Length=69476 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 67960 GACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTG 68019 || |||||||| ||||||||||| |||||||| ||||| || |||| ||| | |||| Sbjct 24678 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAACAGTA 24737 Query 68020 AACCAGATACCAACGACAGGCCATGCAGCAAGGAAG 68055 ||||| ||||| || || ||||| || || | |||| Sbjct 24738 AACCAAATACCTACTACCGGCCAAGCCGCTAAGAAG 24773 >seq19441 Length=80586 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 67077 TTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCCCGAAAGATGGA 67136 ||||| || ||||| | ||||| | || ||||| || | | || || ||| | Sbjct 18340 TTATGAAACCCTTGGAAAAAGAGGATGATACGAAATATAGTCGCTACACCAAAACTACGC 18281 Query 67137 GCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAACAAAAACAGCG 67196 || || ||||||| |||||||| || || || || ||||||||| |||||||||||| Sbjct 18280 GCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGAAAGACAGAAACAAAAACAGCA 18221 Query 67197 ATAGGACCAGAGAACGCAAT 67216 || |||||||||| || || Sbjct 18220 ATTAGACCAGAGAATGCGAT 18201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571901682927240