Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq19364 105 1e-17 seq19979 104 4e-17 seq19630 104 4e-17 seq20655 86.0 1e-11 seq19059 86.0 1e-11 >seq19364 Length=374643 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| | || |||| || | || | ||| || ||| | || || Sbjct 235842 ATGCCACCTCTCAACCTGAGAACCAAGTGAAGAGTCGACTCCTTTTGAATGCTGTAATCA 235901 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | || || |||||||| || | |||||| ||||| | | Sbjct 235902 GCCAAAGTACGTCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGTCTCTGCTGATCTGAA 235961 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||||||||| ||| || | ||| ||| || || ||| |||| Sbjct 235962 GGGATCCCTTCCTTATCTTGTATCTTGACCTTGACATTATCAATGGTGTCTGAACTCTCA 236021 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| ||||| | || || || || || |||||||| ||||||||| Sbjct 236022 ACCTCTAGGGTTATGGCCTTCCCAGTAAGAGTCTTTACAAAGATTTGCATT 236072 >seq19979 Length=600886 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | |||| || | ||| | ||| || ||||| ||||| Sbjct 474976 ATACCACCACGTAGACGCAACACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCA 474917 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||||| || || | || ||||||||||| || || ||||| ||||| ||| Sbjct 474916 GCCAAAGTTCTACCGTCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGA 474857 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || |||| ||| | ||| |||||| || ||| ||| Sbjct 474856 GGGATACCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCAGAACTCTCC 474797 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || || || || || || || || || || || ||||| Sbjct 474796 ACCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 474747 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| ||||||||||| || || ||||| || || ||||| || || || || Sbjct 465264 ATCTTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGAATGCCCTCCTT 465205 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || |||| ||| | ||| ||| || || ||| ||| || || | ||| || Sbjct 465204 GTCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAACTCTCCACCTCCAAAGTAAT 465145 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | ||| || ||||| |||||||| Sbjct 465144 GGTCTTTCCCGTCAACGTCTTGACAAAGATTTGCAT 465109 >seq19630 Length=159711 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||||||||| || || | |||||| ||||| ||||| ||||||||||| ||||| || Sbjct 121587 TGTTTTCCGGCGAAGATCAGTCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGGATC 121646 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || || || ||||| || || || || || || || || Sbjct 121647 TTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCG 121706 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTTATTAGT 193369 ||||| ||||| || || || ||||| || | ||| Sbjct 121707 GTTAGGGTTTTCACGAAGATCTGCATCTTTTGAGT 121741 >seq20655 Length=190867 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | | || || ||||| || || | ||| || |||||||||||| Sbjct 174214 ATACCACCACGGAGCCTGAGGACGAGATGTAAAGTCGACTCCTTTTGAATATTATAGTCA 174273 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | ||| ||||| ||||| || || || || || || || Sbjct 174274 GCAAGAGTACGGCCATCCTCGAGTTGCTTTCCTGCAAAGATCAACCTTTGCTGGTCCGGT 174333 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || |||||||| || || | || | ||| |||||| || ||| ||| Sbjct 174334 GGGATTCCCTCCTTATCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAACTCTCC 174393 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| ||||| || || || | || || || || || ||||| Sbjct 174394 ACCTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 174443 >seq19059 Length=274371 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | | || || ||||| || || | ||| || |||||||||||| Sbjct 257718 ATACCACCACGGAGCCTGAGGACGAGATGTAAAGTCGACTCCTTTTGAATATTATAGTCA 257777 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | ||| ||||| ||||| || || || || || || || Sbjct 257778 GCAAGAGTACGGCCATCCTCGAGTTGCTTTCCTGCAAAGATCAACCTTTGCTGGTCCGGT 257837 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || |||||||| || || | || | ||| |||||| || ||| ||| Sbjct 257838 GGGATTCCCTCCTTATCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAACTCTCC 257897 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| ||||| || || || | || || || || || ||||| Sbjct 257898 ACCTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 257947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899414226012240