Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq18898 98.7 1e-15 seq19364 91.5 2e-13 seq20655 89.7 8e-13 seq19059 89.7 8e-13 seq21172 84.2 3e-11 >seq18898 Length=1351152 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || ||||| || || | |||||||| ||| Sbjct 748659 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGCTCT 748718 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| || || ||||||||||| || || || ||||| || Sbjct 748719 GACACCATCGACAACGTCAAAGCAAAGATCCAAGATAAAGAGGGAATCCCACCAGACCAG 748778 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||||||||||||||||||||| | ||| | | ||||| ||| Sbjct 748779 CAGAGACTCATCTTTGCCGGTAAGCAGCTCGAAGACGGACGTACTCTCGCGGATTACAAT 748838 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | ||||| || | ||||| Sbjct 748839 ATTCAGAAGGAGTCCACGCTCCACCTTGTGTT 748870 >seq19364 Length=374643 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||| ||||| || || ||| | || ||||| ||| Sbjct 235409 ATGCAGATATTTGTCAAGACTTTGACGGGAAAGACCATCACACTTGAGGTCGAGAGCTCT 235350 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||||| || || ||||| |||||||| || | || || || Sbjct 235349 GATACGATTGATAACGTGAAGTCCAAGATTCAAGACAAAGAAGGGATTCAACCGGACCAG 235290 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTA 155990 || || |||| | ||| || ||||||||||| ||| || |||||| Sbjct 235289 CAGAGGCTGATATTTGCAGGGAAGCAGCTCGAGGATGGTAGGACTTTA 235242 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || | ||||| || | || || |||| || || ||| Sbjct 236072 AATGCAAATCTTTGTAAAGACTCTTACTGGGAAGGCCATAACCCTAGAGGTTGAGAGTTC 236013 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || || ||||||||||| ||||| || ||| |||| || Sbjct 236012 AGACACCATTGATAATGTCAAGGTCAAGATACAAGATAAGGAAGGGATCCCTTCAGATCA 235953 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || ||| | || | |||||| |||||||| || ||| | ||||| | ||||| | Sbjct 235952 GCAGAGACTCATCTTTGCCGGGAAGCAGCTTGAGGATGGACGTACTTTGGCTGATTACAG 235893 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| ||| |||| ||||| || || | || || ||||| || Sbjct 235892 CAT-TCAAAAGGAGTCGACTCTTCACTTGGTTCTCAGGTTGAGAGGTGG 235845 >seq20655 Length=190867 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | || ||||| || || || | || || ||| ||| Sbjct 174671 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAAAGCTCT 174612 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| || || || ||||| |||||||| ||||| || || Sbjct 174611 GACACGATCGACAACGTTAAAGCCAAGATTCAGGATAAGGAAGGCATTCCTCCGGATCAG 174552 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | |||||||||||| | ||||| | | |||||| | ||||| ||| Sbjct 174551 CAAAGGCTTATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGTACTTTAGCCGATTACAAT 174492 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| |||| || || || ||||| Sbjct 174491 ATCCAGAAGGAGTCGACTCTCCACTTGGTGTT 174460 >seq19059 Length=274371 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | || ||||| || || || | || || ||| ||| Sbjct 258175 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAAAGCTCT 258116 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| || || || ||||| |||||||| ||||| || || Sbjct 258115 GACACGATCGACAACGTTAAAGCCAAGATTCAGGATAAGGAAGGCATTCCTCCGGATCAG 258056 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | |||||||||||| | ||||| | | |||||| | ||||| ||| Sbjct 258055 CAAAGGCTTATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGTACTTTAGCCGATTACAAT 257996 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| |||| || || || ||||| Sbjct 257995 ATCCAGAAGGAGTCGACTCTCCACTTGGTGTT 257964 >seq21172 Length=998197 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 155912 ACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCT 155971 ||| || |||||||| ||||| ||||| ||||| || |||| | |||||||||||| || Sbjct 271859 ACAGGACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGTAAGCAACT 271918 Query 155972 CGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 |||||| |||| || | ||||| || || |||||| | || |||||| | || Sbjct 271919 GGAAGATGGACGAACACTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTCGT 271978 Query 156032 GTTAAGATTAAGAGGCGGT 156050 || || | ||||| ||| Sbjct 271979 CTTGAGGCTCAGAGGTGGT 271997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731676617621200