Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq21172 116 7e-21 seq18898 95.1 2e-14 seq19364 93.3 8e-14 seq20655 91.5 3e-13 seq19059 91.5 3e-13 seq19630 87.8 4e-12 >seq21172 Length=998197 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| |||||||||| || | || || | ||| | ||||| |||||| ||| || ||| Sbjct 272002 ATAGTACCACCTCTGAGCCTCAAGACGAGATGAAGAGTAGACTCTTTCTGGATGTTGTAA 271943 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | || ||||||| |||| |||| ||| ||||| ||||| || | ||||||||||| Sbjct 271942 TCCGCTAGTGTTCGTCCATCTTCCAGTTGCTTACCGGCAAATATCAGCCTCTGTTGATCT 271883 Query 192424 GGTGGTATTCCTTCTTTATCTTGT 192447 |||||||| |||||||| || ||| Sbjct 271882 GGTGGTATACCTTCTTTGTCCTGT 271859 >seq18898 Length=1351152 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || || | || | || | ||| || ||||| ||||| Sbjct 748888 ATACCACCACGGAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGAATATTGTAATCC 748829 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || ||| | || || | || ||||| |||||||| | |||||| || || ||| Sbjct 748828 GCGAGAGTACGTCCGTCTTCGAGCTGCTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGT 748769 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||||||||| || || ||| || || || | || || || Sbjct 748768 GGGATTCCCTCTTTATCTTGGATCTTTGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCG 748709 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || |||||||| || || || || || | ||| |||||||| Sbjct 748708 ACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 748659 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || ||||| | ||| | ||| || ||| || ||||||| Sbjct 749341 CCGCCACGAAGACGAAGAACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 749282 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| || | ||||||||||| ||||| | |||||| || || || || Sbjct 749281 AGAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGCTGGTCTGGCGGG 749222 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || ||||| || || || || || || | || || || || Sbjct 749221 ATCCCTTCCTTGTCTTGAATCTTCGCCTTCACGTTGTCAATTGTGTCAGAGCTCTCAACC 749162 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||||||||| || || | || || | || |||||||| Sbjct 749161 TCGAGAGTAATGGTTTTTCCGGTGAGGGTCTTGACGAAAATCTGCAT 749115 >seq19364 Length=374643 Score = 93.3 bits (102), Expect = 8e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420 ||||||| | || || |||| || | |||||| || |||||||| | |||||| || Sbjct 235462 TAATCAGCAAGGGTGCGACCATCCTCAAGTTGTTTCCCTGCAAAGATGAGTCTCTGCTGG 235521 Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 || | || || ||||| || ||||| || ||| ||| |||||| |||| ||||| Sbjct 235522 TCCGAGGGGATCCCTTCCTTGTCTTGGATCTTAGCTTTGACATTATCGATAGTGTCTGAG 235581 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 || || ||||||||||| |||||||||| Sbjct 235582 CTCTCAACCTCTAGAGTAATCGTTTTACCAG 235612 Score = 87.8 bits (96), Expect = 4e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || |||||||| | | | || || || | ||| | ||| ||| || || | ||||| Sbjct 235842 ATGCCACCTCTCAACCTGAGAACCAAGTGAAGAGTCGACTCCTTTTGA-ATGCTGTAATC 235900 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || || ||| |||| || | || || || |||||||| | |||||| ||||| | Sbjct 235901 AGCCAAAGTACGTCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGTCTCTGCTGATCTGA 235960 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| ||||||||||| || || |||||| || | ||||| || Sbjct 235961 AGGGATCCCTTCCTTATCTTGTATCTTGACCTTGACATTATCAATGGTGTCTGAACTCTC 236020 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| || |||| || ||||| | || || | ||| || |||||| Sbjct 236021 AACCTCTAGGGTTATGGCCTTCCCAGTAAGAGTCTTTACAAAGATTTGCATT 236072 >seq20655 Length=190867 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| || || || || | || | ||| || ||| ||||| |||| || |||| Sbjct 173998 AGACGCAAGACCAAGTGAAGTGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTTCTA 174057 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || | || || ||||||||||| || ||||| ||||| || || || || || Sbjct 174058 CCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCC 174117 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || ||||| || || ||| |||||| || | ||| || || || || | |||| Sbjct 174118 TTGTCTTGAATCTTCGCTTTCACATTATCAATCGTATCAGAGCTCTCCACCTCCAAAGTA 174177 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || | ||| |||||||| Sbjct 174178 ATAGTCTTTCCCGTCAACGTCTTGACAAAAATCTGCAT 174215 >seq19059 Length=274371 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| || || || || | || | ||| || ||| ||||| |||| || |||| Sbjct 257502 AGACGCAAGACCAAGTGAAGTGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTTCTA 257561 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || | || || ||||||||||| || ||||| ||||| || || || || || Sbjct 257562 CCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCC 257621 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || ||||| || || ||| |||||| || | ||| || || || || | |||| Sbjct 257622 TTGTCTTGAATCTTCGCTTTCACATTATCAATCGTATCAGAGCTCTCCACCTCCAAAGTA 257681 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || | ||| |||||||| Sbjct 257682 ATAGTCTTTCCCGTCAACGTCTTGACAAAAATCTGCAT 257719 >seq19630 Length=159711 Score = 87.8 bits (96), Expect = 4e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || || || |||| || | ||||| || || ||||| | ||| Sbjct 121550 GATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAGTCT 121609 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| || || ||||||||||| ||||| || || || ||||| || | Sbjct 121610 CTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGT 121669 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || || || || || || ||||| || || |||| ||||| | || ||||| Sbjct 121670 GTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTG 121729 Query 192534 CATTTT 192539 ||| || Sbjct 121730 CATCTT 121735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984210610276950