Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq18898 100 5e-16 seq19364 91.5 3e-13 >seq18898 Length=1351152 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || || | || | || | ||| || |||||| ||||| Sbjct 748888 ATACCACCACGGAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGAATATTGTAATCC 748829 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| |||| || | || ||||| ||||| || | |||||| ||||| ||| Sbjct 748828 GCGAGAGTACGTCCGTCTTCGAGCTGCTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGT 748769 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||||||||| || || ||| || || || || || || || Sbjct 748768 GGGATTCCCTCTTTATCTTGGATCTTTGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCG 748709 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || |||||||| || || || || || | || |||||||| Sbjct 748708 ACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 748659 >seq19364 Length=374643 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||| || ||||| || | |||||| ||||| | || || ||||| || Sbjct 235483 TCCTCAAGTTGTTTCCCTGCAAAGATGAGTCTCTGCTGGTCCGAGGGGATCCCTTCCTTG 235542 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || ||| ||| |||||| ||||| ||||| || || ||||||||||| Sbjct 235543 TCTTGGATCTTAGCTTTGACATTATCGATAGTGTCTGAGCTCTCAACCTCTAGAGTAATC 235602 Query 172035 GTTTTACCAG 172044 |||||||||| Sbjct 235603 GTTTTACCAG 235612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904894362630600