Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq19542 134 4e-26 seq20837 131 5e-25 seq21195 125 2e-23 seq18741 104 7e-17 seq20171 86.0 2e-11 >seq19542 Length=58103 Score = 134 bits (148), Expect = 4e-26 Identities = 286/419 (68%), Gaps = 16/419 (4%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || |||| ||||||| || ||||| || ||||| || ||| Sbjct 19497 AAAGCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCTCTCTCATCGTTCCCACC 19438 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAA 289056 || | || |||||| ||| ||||||||||||||||||| || || ||| Sbjct 19437 TCCCATACCA--------GCTCCTCTTTGCCTACCAACAGCATCAATTTCATCTATAAAA 19386 Query 289057 ATCACACACGGAGAATTTTGTC-TCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 | | ||| |||| ||| | | |||| | ||||||| || || || | || || || Sbjct 19385 ACAATACAAGGAG-CTTTCGCCTTCGCCTTCTCAAATAAATCCCTAACCCTAGAAGCACC 19327 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTACATTTG 289174 || ||||||| | | || ||||| |||||||| | | || || ||| | || || Sbjct 19326 AACACCAACAAAAAGCTCAACAAACTCAGAAGCAGCACAC-GAAAAGAACGGCACTCCTG 19268 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 |||| || || || || || |||| ||| |||||||| ||||||||||| || | || | Sbjct 19267 CTTCTCCAGCCACAGCTCTAGCCAAAAGCGTCTTACCCGTTCCAGGTGGACCAACCAACA 19208 Query 289235 GAACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 ||| |||||| || | || || || || |||| || || || |||| || || Sbjct 19207 -AACACCCTTTAGGAATCTTAGCTCCTAAAGCTGTATACTTATCTGGATTCTTCAAGAAG 19149 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || | ||| | || ||| || || | |||| |||||| ||||| |||| || Sbjct 19148 TCAACCACTTCTTGTAGCTCAAGCTTAGCTTGATCAGCTCCTGCAACATCCCCAAACGT 19090 >seq20837 Length=368380 Score = 131 bits (144), Expect = 5e-25 Identities = 363/545 (67%), Gaps = 20/545 (4%) Strand=Plus/Minus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| ||||||||| | ||||| |||| |||||||||||| |||| | || Sbjct 291785 CCAGCAACATCAGGCCTATCCACCGTCACCTGCCTATCAAACCTTCCAGGCCTCAACAAC 291726 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAA---CAATAGATTCGGTT 288933 || | || | | ||| | ||| || || |||||||| |||| || ||| ||| Sbjct 291725 GCAGAATCAAGAACATCAGGTCTATTCGTAGCTGCCAAAACAATCACACCAGA----GTT 291670 Query 288934 TGCTTAAATCC-ATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATT 288992 | ||| || |||||| || || | ||||||| || |||||||| |||||||| Sbjct 291669 ACCAGAAAACCCATCCATCTCAGTCAACAACTGATTAATCGTCTGTTCCCTCTCATCATT 291610 Query 288993 TGAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAAT 289052 | |||| || || | | ||| | | |||| ||||||||||| || ||||| Sbjct 291609 TCCTCCTCC-----CATCCCAGCCCCTC-TCTGCCTACCCACAGCATCAATCTCATCAAT 291556 Query 289053 GAAAATCACACACGGAGAATTTTGTC-TCGCAATTGCAAATAATTCTCTTACACGGGATG 289111 ||||| | ||| |||| ||| | | | || | |||| || || || || | || | Sbjct 291555 GAAAACAATACAAGGAG-CTTTCGCCTTAGCCTTCTCAAACAAATCCCTAACTCTAGACG 291497 Query 289112 CTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACA 289170 | |||| ||||||| | | || ||||| |||||||| | || || | ||| | ||| Sbjct 291496 CACCAACACCAACAAAAAGCTCCACAAACTCAGAAGCCG-CACAAGAGAAGAACGGTACT 291438 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 ||||| || || || || || |||| || |||||||| || ||||| || || || Sbjct 291437 CCAGCTTCTCCAGCCACCGCTCTAGCCAAGAGAGTCTTACCCGTACCAGGCGGCCCAACT 291378 Query 289231 AATAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAA 289289 || | ||| |||||| || | || || || || | || || || || |||| || Sbjct 291377 AACA-AACACCCTTTAGGAATCTTAGCTCCCAAAGCTGTGTACTTATCTGGATTCTTCAA 291319 Query 289290 AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 ||| || |||| ||||| | || | || || | || || || ||||| ||||| Sbjct 291318 AAAGTCGACAACTTCCTGTAACTCCAACTTAGCTTGGTCGGCACCAGCAACATCTGCAAA 291259 Query 289350 AGTAA 289354 || || Sbjct 291258 AGAAA 291254 >seq21195 Length=1746141 Score = 125 bits (138), Expect = 2e-23 Identities = 348/518 (67%), Gaps = 28/518 (5%) Strand=Plus/Minus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||||||||| || || | || | || || | ||||| || || | || ||| ||||| Sbjct 1250548 CCTATCAAATCTTCCTGGCCGGATCAAAGCAGAGTCTAGAATCTCCGGTCGGTTCGTTGC 1250489 Query 288909 TGCCAATACAA-CAAT--AG-ATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTT 288964 || | |||| || | || |||| | || || || ||||| ||||||||| | Sbjct 1250488 AGCGATCACAAGCACTCCAGTATTCCCTGTG----AACCCGTCCATTTCTGTTAAAATCT 1250433 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttt 289024 | || || || || || | ||| |||||| |||| ||| ||| | |||||| || Sbjct 1250432 GGTTTAGCGTCTGCTCACGTTCGTCATTTCCTCCTCC-GAA--ACCGG--TCGCTC-TTA 1250379 Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATT-----TTGTCT 289079 || | ||||| |||||||| || |||||||| | | ||| || | ||| ||| || Sbjct 1250378 TTCTCCCAACTGCATCAATCTCATCAATGAACACTAAACAGGGTGCATTAGCCTTTGCCT 1250319 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 | ||| || || ||||| || | || ||||| | ||||||| |||| |||| || Sbjct 1250318 TG---TTG--AACAAGTCTCTAACCCTAGACGCTCCTACACCAACAAACATCTCTATGAA 1250264 Query 289140 TTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCA 289198 || || |||| | |||| | || | || ||||| || |||| ||| | |||| Sbjct 1250263 CTCCGAGCCGGAAA-TTGAGAAAAACGGAACTCCAGCTTCTCCGGCTATGGCCTTTGCCA 1250205 Query 289199 GAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCC 289258 || ||||| |||||||| || ||||| || | || || ||||||| ||| |||| Sbjct 1250204 AGAGAGTCTTTCCTGTTCCCGGAGGTCCGGTCAACAAGACACCTTTTGGTATTTTAGCCC 1250145 Query 289259 CAGCAGACTTATA-TTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 | || || | | ||| || || | | || ||||| || || || |||| || | Sbjct 1250144 CCA-AGGCTGAGAATTTTTCTGGTGTTCTCAAGAATTCAACGATCTCTTCAAAGTCTTGC 1250086 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAAT 289355 || || || || |||||||||||| |||| || || Sbjct 1250085 TTGGCTTCGTCTACTCCTGCTACATCCTCAAACGTTAT 1250048 >seq18741 Length=287810 Score = 104 bits (114), Expect = 7e-17 Identities = 314/474 (66%), Gaps = 26/474 (5%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTG--CTT-AAATCCA 288945 || || |||||||| ||||| || | || | |||| |||| | ||| ||||||| Sbjct 95298 ATGTCAGCTCTGTTGGTTGCAGCAACCACGATAATAC---CGGTATTACCTTCAAATCCA 95242 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| |||| || ||||| || || ||||| ||||||||||| ||||| Sbjct 95241 TCCATCTCAGTTAGAAGCTGATTCAGAGTCTGTTCTCTTTCATCATT---ACCTC----- 95190 Query 289006 TCACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCAC 289061 || || | || | |||| ||| ||||||||||||||||||| || | || | | Sbjct 95189 -CA-CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCCACAAAGACAAT 95132 Query 289062 ACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 || |||| |||| | || ||| ||| | || | || | || || |||| | Sbjct 95131 GCAAGGAGCGTTTTCCTTGGCTTTCTTGAAAAGA--TCACGGACTCTCGAGGCACCAACA 95074 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTC 289178 |||||| |||| || ||||| |||||| | || | | || | ||| | ||| ||||| Sbjct 95073 CCAACAAACATCTCAACAAACTCAGAACCAGAGA-TGGAGAAGAAAGGCACACCAGCTTC 95015 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || || | || |||||| ||| || || || || ||||| || || | ||||| Sbjct 95014 ACCAGCAATAGCTTTCGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAAC 94955 Query 289239 TCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTAC 289298 || || || | || ||| | | | | ||||||| |||| | ||| || || Sbjct 94954 ACCTTTCGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCAAC 94895 Query 289299 AATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || |||| | || | ||||| |||||| ||| || |||||| |||| || Sbjct 94894 AACTTCCATGAAATCTTGCTTTGCTTCATCAACTCCAGCGACATCATCAAACGT 94841 >seq20171 Length=181113 Score = 86.0 bits (94), Expect = 2e-11 Identities = 118/164 (72%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 233259 TTAAAAATGTT-GTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGC 233317 || |||| ||| | |||||| || |||||||| ||||||||||||||||| |||| |||| Sbjct 41900 TTCAAAAAGTTAGCAGCACCATGTGCAATCATGCAATCACGTTCCATTTCTCCAAAACGC 41959 Query 233318 AGACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCC 233377 | |||||||||| || | || | ||| ||| | ||||| | ||||| Sbjct 41960 AAACCACCATCACGCGATCGCCCTTCAGCTGGTTGTCTTGTTAAGATTTGCACAGGACCT 42019 Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCT 233421 | |||| | | ||| || || | |||||||||||||| ||| Sbjct 42020 CGTCCACGCGAGTGAATCTTGTCGTCAACCATATGCTTCAATCT 42063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471414856891309