Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq17269 533 2e-146 seq20510 360 2e-94 seq19338 199 5e-46 >seq17269 Length=4150 Score = 533 bits (590), Expect = 2e-146 Identities = 722/1001 (72%), Gaps = 4/1001 (0%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| |||||| ||||| | ||| |||| ||||||||||| || Sbjct 2742 TTCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 2801 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| | ||| | || || || | ||| ||| | |||||||| |||||||| Sbjct 2802 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 2860 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 72412 |||||| ||||| || || || | ||||| ||| | || ||| ||||| || || |||| Sbjct 2861 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 2919 Query 72413 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 72472 | || || || ||||| | |||| |||| || || || || || || || || | Sbjct 2920 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGA 2979 Query 72473 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTA 72532 |||||||||| || | | || || ||| | || || || |||||||| | || || Sbjct 2980 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATTG 3039 Query 72533 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 72592 || | ||||| | |||| | || || |||||| | |||||||||| | | Sbjct 3040 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 3099 Query 72593 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 72652 | || || ||| | |||||||| ||| ||||| ||||| ||||| | || || || Sbjct 3100 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 3159 Query 72653 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 72712 | || ||| | | || ||| | ||||| || || |||||||||||||| ||||| | Sbjct 3160 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 3219 Query 72713 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 72772 |||| ||||| |||||||| ||| | || ||||| || || |||||||| || ||||||| Sbjct 3220 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 3279 Query 72773 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 72832 | || || ||| ||||||||| ||| | ||||| || || || ||||| ||||||| Sbjct 3280 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACG 3339 Query 72833 GTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACG 72892 |||| | || ||||| | | ||||| || || ||||| || || | || | | Sbjct 3340 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 3399 Query 72893 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 72952 | || | ||||| |||||||||||||| || |||||||| |||||||| || || || | Sbjct 3400 GTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 3459 Query 72953 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 73012 | |||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | | Sbjct 3460 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 3519 Query 73013 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCA 73072 | | | || ||||| || | ||||| || | | ||||| |||| ||||| |||| Sbjct 3520 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 3579 Query 73073 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 73132 |||| || || ||||| |||||||||||||| || ||| | ||| || | | Sbjct 3580 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 3639 Query 73133 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 73192 | |||| ||| || ||||| | || |||||||| |||||||||||||||||| | |||| Sbjct 3640 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 3699 Query 73193 CACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 73233 | ||||||||||| ||||||||||| ||| |||| || || Sbjct 3700 CTCACAACTTCCCGCTAGACCTAGCTGCTGTTGAGGCTCCA 3740 >seq20510 Length=252746 Score = 360 bits (398), Expect = 2e-94 Identities = 709/1049 (68%), Gaps = 21/1049 (2%) Strand=Plus/Plus Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412 ||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | | Sbjct 62266 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 62325 Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 73472 | ||||||||||| || || || || ||||| || | || | || ||||||||| || Sbjct 62326 GTTGGTCTGGTCTATTGCTCTTTCCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAG 62385 Query 73473 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 73532 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 62386 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTT 62445 Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 73592 ||||||||||| || ||||| || || |||| | || | | | ||| | | |||| Sbjct 62446 GCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 62505 Query 73593 TCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 73652 | || ||||| || || |||||||||||| || || |||| ||||||||| || || | Sbjct 62506 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGT 62565 Query 73653 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 73712 || ||||| || | || || | || | | | |||||||| ||| | | || |||| Sbjct 62566 GGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 62625 Query 73713 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCG 73772 | |||| || |||| | || ||||| || ||| | || || || | || | Sbjct 62626 AACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTG 62685 Query 73773 CAGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCAC 73832 | || || |||||||||| ||||| |||| || | |||||||||| || | Sbjct 62686 CTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 62745 Query 73833 CTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 73892 || || ||||| || || || ||||| | || | || | || || || || ||| Sbjct 62746 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATT 62805 Query 73893 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 73952 || | || ||||||||||||||||| || || ||| |||| || | || | |||| Sbjct 62806 GGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTAT 62865 Query 73953 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 74012 | || || |||||||| || ||| | || || || | |||||| || Sbjct 62866 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 62910 Query 74013 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTT 74072 | | | | ||| |||| ||| | || || | || || || | ||||| |||| Sbjct 62911 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 62964 Query 74073 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 74132 || ||| | || |||||| | || |||||||| || ||||| | || ||||| || | Sbjct 62965 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 63024 Query 74133 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 74192 || | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 63025 AACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTC 63084 Query 74193 TAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAA 74252 | || | || |||||||| | ||||| | || || ||||| || || || || || Sbjct 63085 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 63144 Query 74253 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 74312 | ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || |||| Sbjct 63145 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 63204 Query 74313 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 74372 |||| | || |||||| | || ||||| || ||||| ||| || | ||||| || | Sbjct 63205 GTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 63264 Query 74373 AAGTCTTGCCACGAGGCAACGCACTATAA 74401 | || | ||||| || ||||| || ||| Sbjct 63265 AGGTTCTACCACGTGGAAACGCTCTTTAA 63293 Score = 141 bits (156), Expect = 1e-28 Identities = 141/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 73051 GGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 73110 ||||| |||| ||||| |||||||| || || ||||| |||||||||||||| || ||| Sbjct 30741 GGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTCGTTGAT 30682 Query 73111 GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATG 73170 | ||| || | || |||| ||| || ||||| | || |||||||| ||| Sbjct 30681 AGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATG 30622 Query 73171 GAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCT 73230 ||||||||||||||| | ||||| ||||||||||| ||||||||||| ||| |||| || Sbjct 30621 GAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTAGACCTAGCTGCTGTTGAGGCT 30562 Query 73231 ACA 73233 || Sbjct 30561 CCA 30559 >seq19338 Length=76300 Score = 199 bits (220), Expect = 5e-46 Identities = 567/868 (65%), Gaps = 24/868 (3%) Strand=Plus/Plus Query 73535 AATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTC 73594 |||||||||||||| ||||| | || |||| | || | | | ||| | | ||||| Sbjct 38326 AATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCTTTGTTGTTA 38385 Query 73595 CTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGG 73654 || ||||| || || |||||||||||| || || |||| ||||||||| || | || Sbjct 38386 CTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTATGTGC 38445 Query 73655 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGG-TTTCATGCTTAGACAGTTTGA 73713 | | ||| || | || || | || | | | ||||| ||| ||| | | || ||||| Sbjct 38446 GATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACGTCAATTTGA 38505 Query 73714 GATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGC 73773 |||| || ||| | || ||||| || ||| | || || || | || || Sbjct 38506 ACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 38565 Query 73774 AGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACC 73833 || || |||||||||| ||||| |||| || | |||||||||| || || Sbjct 38566 TGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCC 38625 Query 73834 TTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATAT 73893 | || ||||| || || | ||||| | || | || | || || || || ||| Sbjct 38626 TAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTG 38685 Query 73894 AACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATG 73953 || | || ||||||||||||||||| || || ||| |||| | | || | ||||| Sbjct 38686 GACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGCGGCTCTGCTATG 38745 Query 73954 TGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGA 74013 || || |||||||| || ||| | || || || | | |||| || Sbjct 38746 CGCTATTCATGGTGCTACTGTA-AAAATACTTTATTTAAAGA---------------TG- 38788 Query 74014 AGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTA 74073 | | | | ||| |||| ||| | | || | || || || | |||||| ||||| Sbjct 38789 -GTGATGGTGCAA-ATACA---TTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTA 38843 Query 74074 TAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAA 74133 | ||| | || |||||| || |||||||| || ||||| || ||||| || || Sbjct 38844 TTCAATGGTCACCGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAA 38903 Query 74134 AAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTAT 74193 | | | ||| | | ||||||| || ||||| || ||| | | || || | Sbjct 38904 GTGTTGGTAACATTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCT 38963 Query 74194 AGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAG 74253 || | || |||||||| | ||||| | || ||||| || || || || || | Sbjct 38964 TGGAGTAGTCGGTCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCG 39023 Query 74254 AGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGG 74313 ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || ||||| Sbjct 39024 TGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAA-AATATTCTTTTAAACGAAGG 39082 Query 74314 TATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGA 74373 ||| | || ||||| | || ||||| || ||||| ||| || | ||||| || || Sbjct 39083 TATTCGCGCTTGGATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 39142 Query 74374 AGTCTTGCCACGAGGCAACGCACTATAA 74401 || | ||||| | ||||| || ||| Sbjct 39143 GGTTCTACCACGTGAAAACGCTCTTTAA 39170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572720664231560