Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq20199 156 5e-32 >seq20199 Length=1256174 Score = 156 bits (172), Expect = 5e-32 Identities = 219/300 (73%), Gaps = 7/300 (2%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||| ||||| || ||||||||||| ||||| || || | | | || | |||| Sbjct 343714 CCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCTTCAGAGACTT 343773 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || ||||||||| || || |||||| ||||| ||||| ||||||| Sbjct 343774 GCACATCGGACATGAACCGTGAAGCGAGATTCTCGAGAACGATTCCGTCAGATGCGGCGA 343833 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--G 869808 | ||||| |||||||| ||||| ||||| | ||| ||||| |||| | |||||| Sbjct 343834 AGAAAGCGAGGACGTGTTTGATGAAGTGCCTCTCTCCGTCGTTGAGATTCTCCCAGTCGC 343893 Query 869809 GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 ||| || | | | | || || || || || || ||||||| || || ||||| || || Sbjct 343894 GACCGTCT-TGAGAT-AGATCGACTTCTTCAGCCGTCCAGAAAGATGCTTCGGCTTTCTT 343951 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGTTG 869926 |||||||||||| | || ||||| |||| ||||| | ||| || | || |||||||| Sbjct 343952 GTACATCTCCCAGATCTGAGGGTAGTGGATTGGGAACA-TACAGAATCTGTCTGGGGTTG 344010 Score = 122 bits (134), Expect = 1e-21 Identities = 191/272 (70%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||| |||||| || | | || |||||||| || || ||| Sbjct 343437 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAAGTCAACCCAGGCATGAGACCTCGTTTC 343496 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||| | |||||| ||||| ||||| ||||| || |||||| || ||| Sbjct 343497 TTGAGCCAGAAGATTGAGCAGAAGCTGCCTGAGAAGAAGATACCTTCGACGCAAGCGAAG 343556 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||| || | ||| || || || | ||| || | |||||||||||| ||||| Sbjct 343557 GCGACGATTCTCTCAGCGAAAGTCT-GAGATCC-----ATCGATCCACTTCATGGCCCAT 343610 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | ||| ||||| || | || | || |||||||| |||||||| ||||| | || Sbjct 343611 TGGGCTTTTTTAGCGACGCAAGGGATTGTTTCGATGGCCCGAAAGAGATGGTCTCTCTCT 343670 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 ||| |||| || ||||||| ||||| Sbjct 343671 TTGTTGTCTTTGATGTAAGTGTCGAGGAGGAG 343702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105386544565169