Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq18898 96.9 3e-15 seq19630 82.4 6e-11 >seq18898 Length=1351152 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAA-ACG-GAGC-CT 110329 ||||| || |||||||| ||||| |||||||||||||| ||| ||||| || |||| || Sbjct 748659 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGCTCT 748718 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||| || ||||| || | || || Sbjct 748719 GAC---ACCATCGACAACGTCAAAGCAAAGATCCAAGATAAAGAGGGAATCCCACCAGAC 748775 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || ||||| || | ||| ||||| ||||| || || | | || | ||||||||| Sbjct 748776 CAGCAGAGACTCATCTTTGCCGGTAAGCAGCTCGAAGACGGACGTACTCTCGCGGATTAC 748835 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || ||||| || || || ||| | ||| | ||||| Sbjct 748836 AATATTCAGAAGGAGTCCACGCTCCACCTTGTGTT 748870 >seq19630 Length=159711 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || ||||| |||||||||| ||||| ||| |||| ||| | Sbjct 121735 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 121676 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | | || || ||||| ||||||||||| | || |||| Sbjct 121675 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGAT 121616 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || ||||| || | || || |||||||| || |||| | | || |||| || ||| Sbjct 121615 CAGCAGAGACTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGTACTTTGGCTGACTAC 121556 Query 110450 AACATTCAAAAAG 110462 ||||| || |||| Sbjct 121555 AACATCCAGAAAG 121543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412734142105001