Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq20199 168 1e-35 >seq20199 Length=1256174 Score = 168 bits (186), Expect = 1e-35 Identities = 234/327 (72%), Gaps = 7/327 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || |||||| |||||| || | || |||||||| || || ||| Sbjct 343437 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAAGTCAACCCAGGCATGAGACCTCGTTTC 343496 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||| | ||||| ||||| ||||| ||||| || |||||| || ||| Sbjct 343497 TTGAGCCAGAAGATTGAGCAGAAGCTGCCTGAGAAGAAGATACCTTCGACGCAAGCGAAG 343556 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||||| | ||| || ||||| | || || |||||||||||| ||||| Sbjct 343557 GCGACGATTCTCTCAGCGAAAGTCTGAGATCCATC------GATCCACTTCATGGCCCAT 343610 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | || ||||| || | || | || |||||||| |||||||| ||||| |||| Sbjct 343611 TGGGCTTTTTTAGCGACGCAAGGGATTGTTTCGATGGCCCGAAAGAGATGGTCTCTCTCT 343670 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 ||| |||| ||| ||||||| |||||| ||| |||| |||||||| || || Sbjct 343671 TTGTTGTCTTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTCCGAGTGGATATTCTCA 343730 Query 794641 ATGGCGATCTGGAAGCCATA-AAAGCA 794666 || ||||||||||| || || |||||| Sbjct 343731 ATCGCGATCTGGAACCCGTAGAAAGCA 343757 Score = 111 bits (122), Expect = 2e-18 Identities = 159/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218 ||||| || || |||||| || || || ||||| ||||| ||||| ||| Sbjct 343770 ACTTGCACATCGGACATGAACCGTGAAGCGAGATTCTCGAGAACGATTCCGTCAGATGCG 343829 Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAG 796278 ||||| || ||||||||||| ||||| ||||| | ||| ||||| |||| ||||| Sbjct 343830 GCGAAGAAAGCGAGGACGTGTTTGATGAAGTGCCTCTCTCCGTCGTTGAGATTCTCCCAG 343889 Query 796279 TGG--ACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCT 796336 | | ||||| | | || ||||| || || || ||||| || || || ||||| | Sbjct 343890 TCGCGACCGTCTTGAGATAGA--TCGACTTCTTCAGCCGTCCAGAAAGATGCTTCGGCTT 343947 Query 796337 TTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 | |||||||||||||| ||| | ||||| |||| ||||||| Sbjct 343948 TCTTGTACATCTCCCAGATCTGAGGGTAGTGGATTGGGAACA 343989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913974558500723