Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq18898 113 4e-20 seq20422 86.0 5e-12 >seq18898 Length=1351152 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||||| || ||||||||||| ||| ||||| ||| ||| Sbjct 748659 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGCT-C 748717 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| |||||| |||||||| || | || || || Sbjct 748718 TGACACCATCGACAACGTCAAAGCAAAGATCCAAGATAAAGAGGGAATCCCACCAGACCA 748777 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||| || | ||| ||||| ||||| || |||| || | ||||| ||||| Sbjct 748778 GCAGAGACTCATCTTTGCCGGTAAGCAGCTCGAAGACGGACGTACTCTCGCGGATTACAA 748837 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| |||||||| ||| | ||| | |||||| Sbjct 748838 TATTCAGAAGGAGTCCACGCTCCACCTTGTGTTG 748871 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 107549 GTTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607 ||||| | |||||||| || || |||||| | || ||||| ||||| || |||| | Sbjct 748423 GTTTACAGATGCAAATATTCGTGAAAACTCTCACTGGCAAGACCATCACTCTCGAGGTCG 748482 Query 107608 AG-GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCC 107666 || ||| || || ||| | | || || ||||| || || ||||| | || Sbjct 748483 AGAGCTCT-GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCT 748541 Query 107667 GTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCG 107726 ||| |||||||||||||| | || || || ||||| ||||||| | || | || Sbjct 748542 CCGGACCAGCAGAGACTTATCTTCGCCGGGAAGCAGCTCGAGGACGGAAGGACTCTTGCT 748601 Query 107727 GACTACAACATTCAAAAGGAGTCTAC 107752 ||||||||||| ||||||||||| || Sbjct 748602 GACTACAACATCCAAAAGGAGTCGAC 748627 >seq20422 Length=233597 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || || || || || || || || | || ||| ||| Sbjct 130683 ATGCAGATCTTTGTCAAGACATTGACCGGAAAGACTATCACTTTGGAGGTTGAGAGCTCT 130742 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | || || ||||||| || || || || | || ||| || Sbjct 130743 -GATACCATCGACAATGTTAAGGCAAAGATTCAAGACAAGGAGGGTATCCCTCCGGACCA 130801 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | || || || ||||| || |||| || |||| |||| |||||||| Sbjct 130802 GCAGAGATTGATCTTCGCTGGGAAGCAGCTTGAAGACGGCAGAACATTGGCTGACTACAA 130861 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || ||||||||||| || | ||| |||| ||| Sbjct 130862 TATCCAAAAGGAGTCCACACTTCACTTGGTATTG 130895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398772976980973