Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq19776 123 2e-23 seq19979 102 5e-17 seq19135 100 2e-16 seq21172 95.1 8e-15 seq20422 86.0 4e-12 seq18898 86.0 4e-12 seq20655 84.2 1e-11 seq19059 84.2 1e-11 >seq19776 Length=1148151 Score = 123 bits (136), Expect = 2e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||||| ||| || || ||| || || |||||||| |||| Sbjct 756060 CACCACCACGGAGACGGAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 756001 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||| || |||| |||| ||||| ||||| |||||||| | |||||| || | | Sbjct 756000 CGAGTGTACGCCCGTCTTCCAGCTGTTTCCCGGCGAAAATCAATCTCTGCTGGTCCGGTG 755941 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || ||| ||||| ||| ||| | ||||| |||||| Sbjct 755940 GGATTCCCTCCTTGTCTTGGATCTTCGCTTTCA-CATTGTCGATCGTGTCCGACGATTCC 755882 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 || || | ||||| || || || |||| ||||| || ||||||||||| |||| Sbjct 755881 ACCTCGAGTGTGATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCGTTG 755827 >seq19979 Length=600886 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || ||||| || || || ||| || || ||||||||||||| Sbjct 465564 ACCACCACGGAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGC 465505 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| | || || | || || || || || || | ||||||||| || | || Sbjct 465504 CAATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 465445 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | || || | ||| | ||||||| |||| Sbjct 465444 AATACCTTCTTTGTCTTGAATTTT-GGCTTTTACGTTGTCGATGGTGTCGGAGCTCTCCA 465386 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || || || |||||||||||| Sbjct 465385 CCTCAAGAGTGATGGTCTTCCCGGTCAAAGTCTTAACGAAGATCTGCATA 465336 Score = 84.2 bits (92), Expect = 1e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || ||||| || || || ||| ||||| |||||||| || | ||| || || | Sbjct 465324 ACGCAAGACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCGAGAGTACGCCC 465265 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | ||| ||||||||||| ||||| | |||||| || | || | || || || Sbjct 465264 ATCTTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGAATGCCCTCCTT 465205 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || | || |||| ||| | |||||| ||||| || | || | Sbjct 465204 GTCTTGGATCTT-GGCTTTGACATTGTCAATGGTGTCAGAACTCTCCACCTCCAAAGTAA 465146 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || ||||| || |||||||| |||||| Sbjct 465145 TGGTCTTTCCCGTCAACGTCTTGACAAAGATTTGCATA 465108 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| ||||||||||| || || ||| || || |||||||| || | Sbjct 465792 ACCACCACGAAGACGCAACACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGC 465733 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | || ||||| || || || | ||||||||| || | || Sbjct 465732 CAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGG 465673 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || |||| || | |||||| || || Sbjct 465672 AATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTATCAATGGTGTCAGAACTCTCAAC 465613 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| |||||||| || || || || || || || || ||||||||| Sbjct 465612 TTCAAGAGTGATCGTCTTTCCCGTCAAGGTCTTAACGAAAATCTGCATA 465564 Score = 84.2 bits (92), Expect = 1e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || ||||| || || || ||| ||||| |||||||| |||| |||||||| | Sbjct 475190 ACGCAAGACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGTGTGCGACC 475131 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | || ||||| || || || | |||||| || || | || | ||||| || Sbjct 475130 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCCGGAGGGATGCCTTCCTT 475071 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || || | ||| |||| ||||||| || || || | |||| Sbjct 475070 GTCCTGGATCTTAGCCTTGA-CATTGTCAATGGTGTCGGAACTCTCAACCTCCAGTGTGA 475012 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || | || || ||||||||||||||| Sbjct 475011 TCGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCATA 474974 >seq19135 Length=1448613 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||| ||| |||||| |||| || | || |||||||| || Sbjct 1071207 TCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCTTCGAGCTGCTTTCCGGCGAAT 1071148 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| |||||||| || | || | ||||| ||||| || ||| |||| ||| Sbjct 1071147 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTCA-CATT 1071089 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||||| ||| || || || | ||||| || || || |||| ||||| || Sbjct 1071088 GTCGATCGTGTCTGATGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCAC 1071029 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 1071028 GAAGATCTGCAT 1071017 >seq21172 Length=998197 Score = 95.1 bits (104), Expect = 8e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | || || | ||| ||||| |||||| || ||||||||||| | Sbjct 271997 ACCACCTCTGAGCCTCAAGACGAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGC 271938 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| ||| | || |||| ||| || |||||||| |||| | ||| |||||| | || Sbjct 271937 TAGTGTTCGTCCATCTTCCAGTTGCTTACCGGCAAATATCAGCCTCTGTTGATCTGGTGG 271878 Query 33642 CACACCTTCTTTGTC 33656 | |||||||||||| Sbjct 271877 TATACCTTCTTTGTC 271863 >seq20422 Length=233597 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| |||||||| || || || ||| || || || |||||||||| Sbjct 131137 CCTCCACGCAGACGCAACACCAAGTGAAGCGTAGACTCCTTCTGAATATTGTAATCGGCC 131078 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || || | || ||||| || || || | |||||||||||| | || Sbjct 131077 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGA 131018 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| |||||||| || || | || ||| | ||| | |||||| ||| || Sbjct 131017 ATACCCTCTTTGTCCTGGATCTT-GGCTTTAACGTTGTCAATAGTGTCGGAGCTTTCAAC 130959 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || ||||||||||||||| Sbjct 130958 CTCCAAAGTGATAGTCTTTCCCGTCAGGGTCTTGACAAAGATCTGCATA 130910 >seq18898 Length=1351152 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| ||||| | || || ||| ||| || || || |||||||| | Sbjct 748886 ACCACCACGGAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGAATATTGTAATCCGC 748827 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || ||| |||| || | || || |||||||| || | | |||||| ||| | || Sbjct 748826 GAGAGTACGTCCGTCTTCGAGCTGCTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGTGG 748767 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | || ||||| || || || || || || | ||| | |||||| ||| | Sbjct 748766 GATTCCCTCTTTATCTTGGATCTT-TGCTTTGACGTTGTCGATGGTGTCAGAGCTC---T 748711 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| ||||| || || || || || ||||||||||||||| Sbjct 748710 CGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCATA 748658 >seq20655 Length=190867 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || ||||| ||| || || || |||||||||| Sbjct 174444 ACCACCACGGAGACGCAACACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAATCGGC 174503 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| ||||| || || ||||| || || | | |||||||| | || Sbjct 174504 TAAAGTACGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAGG 174563 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| || || ||| || ||| ||| | ||| | ||||| |||| | Sbjct 174564 AATGCCTTCCTTATCCTGAATCTTGGCTTT-AACGTTGTCGATCGTGTCAGAGCTT---T 174619 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | |||||||| || || || | || || || ||||||||||| Sbjct 174620 CCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 174671 >seq19059 Length=274371 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || ||||| ||| || || || |||||||||| Sbjct 257948 ACCACCACGGAGACGCAACACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAATCGGC 258007 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| ||||| || || ||||| || || | | |||||||| | || Sbjct 258008 TAAAGTACGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAGG 258067 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| || || ||| || ||| ||| | ||| | ||||| |||| | Sbjct 258068 AATGCCTTCCTTATCCTGAATCTTGGCTTT-AACGTTGTCGATCGTGTCAGAGCTT---T 258123 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | |||||||| || || || | || || || ||||||||||| Sbjct 258124 CCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 258175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328618442149440