Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq17269 592 5e-165 seq20510 127 6e-25 >seq17269 Length=4150 Score = 592 bits (656), Expect = 5e-165 Identities = 727/983 (74%), Gaps = 10/983 (1%) Strand=Plus/Plus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | ||| || | || |||||||| |||| |||||||| ||||||| Sbjct 2747 TAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 2806 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | || | || ||||| ||||||||||| ||||| |||| Sbjct 2807 CCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAG 2865 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || |||||||| |||||||| || | Sbjct 2866 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTA 2925 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | ||| || || || | || || ||||| || || Sbjct 2926 TTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTACCCGATCTG 2983 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 ||||||| || ||||||||||||| ||||| || || || | |||| | || | Sbjct 2984 GGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGTTCT 3043 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 ||||| | |||| | | ||| ||||| || |||||||||||||| | || || Sbjct 3044 ACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 3103 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 3104 GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT 3163 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | ||||||| ||||||| || || || || |||| ||||||| | || |||| Sbjct 3164 -TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCT 3222 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 | ||||| ||||||| ||| | |||||||| || || || |||||||| |||||||| | Sbjct 3223 CTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCAT 3282 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||| | ||||| |||||||||||||| || || ||||| ||||| |||||||||| Sbjct 3283 TTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACGGTT 3342 Query 20106 CGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | |||| || | || | ||| | | || || || ||| | ||| | || | ||| Sbjct 3343 C-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 3401 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 |||| || || ||||||||||| || || ||||| ||||| ||||| ||||| ||||| Sbjct 3402 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 3461 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || |||||||||||||| ||| |||||||||| |||||| |||| |||||| | || Sbjct 3462 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 3521 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || |||||||| ||||| |||||||| |||| || || || ||| ||||| || || Sbjct 3522 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 3581 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || || |||||||| || ||||| || | | || | | || ||||| ||| ||||| Sbjct 3582 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 3641 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 |||||||| ||| | || |||||||| || || | || || ||||||||||| |||||| Sbjct 3642 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 3701 Query 20465 CATAACTTCCCACTTGACCTTGC 20487 || |||||||| || ||||| || Sbjct 3702 CACAACTTCCCGCTAGACCTAGC 3724 >seq20510 Length=252746 Score = 127 bits (140), Expect = 6e-25 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 20300 GGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAAC 20359 || |||||||| |||| || || || ||| ||||| || || || || |||||||| Sbjct 30762 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAAT 30703 Query 20360 TTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTC 20419 || ||||| || | | || | | || ||||| ||| ||||||||||||| ||| | Sbjct 30702 TTCAACCAATCAGTCGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATT 30643 Query 20420 AATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTT 20479 || |||||||| || || | || || ||||||||||| |||||||| |||||||| || Sbjct 30642 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTA 30583 Query 20480 GACCTTGC 20487 ||||| || Sbjct 30582 GACCTAGC 30575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148791054876906