Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq20655 102 8e-17 seq19059 102 8e-17 seq19979 93.3 4e-14 seq20422 84.2 2e-11 >seq20655 Length=190867 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | ||||| || || |||||||||||| || |||||| | Sbjct 173773 CGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGACCA 173832 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | |||| |||||||| || || ||||| || ||||| ||| Sbjct 173833 TCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTA 173892 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | || |||| |||||| || | || | Sbjct 173893 TCTTGGATCTTAGCTTTCACGTTATCAATGGTGTCGGAGCTCTCCACCTCTAGAGTGATG 173952 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || || |||| ||||| | ||| ||||||||| || Sbjct 173953 GTCTTCCCTGTCAATGTTTTAACGAAGATCTGCATGCCT 173991 >seq19059 Length=274371 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | ||||| || || |||||||||||| || |||||| | Sbjct 257277 CGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGACCA 257336 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | |||| |||||||| || || ||||| || ||||| ||| Sbjct 257337 TCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTA 257396 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | || |||| |||||| || | || | Sbjct 257397 TCTTGGATCTTAGCTTTCACGTTATCAATGGTGTCGGAGCTCTCCACCTCTAGAGTGATG 257456 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || || |||| ||||| | ||| ||||||||| || Sbjct 257457 GTCTTCCCTGTCAATGTTTTAACGAAGATCTGCATGCCT 257495 >seq19979 Length=600886 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || |||||||||||| | ||| || ||| ||| Sbjct 466001 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCG 465942 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | |||| |||||||| || |||||||| |||||||| || || | Sbjct 465941 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGA 465882 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | || |||| |||||| || | || | || ||| Sbjct 465881 ATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTA 465822 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| || || | |||||||||||| Sbjct 465821 CCGGTCAAGGTCTTCACGAAAATCTGCAT 465793 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | ||||| |||||||||||||||||| | || || | Sbjct 475189 CGCAAGACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGTGTGCGACCA 475130 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || || | |||| ||||||||||| || ||||| |||||||| || Sbjct 475129 TCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCCGGAGGGATGCCTTCCTTG 475070 Query 132029 TC 132030 || Sbjct 475069 TC 475068 >seq20422 Length=233597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| ||||| || | | ||||| || ||||||||||||||| | || Sbjct 131360 ACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCGGCTAAAGT 131301 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| || || | |||| |||||||| || |||||||| || || Sbjct 131300 GCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACC 131241 Query 132022 TTCTTTATC 132030 ||| ||||| Sbjct 131240 TTCCTTATC 131232 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || ||||||||||||||| | ||| || ||| || Sbjct 131575 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGACCATCCTCA 131516 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||||| || || | | |||| |||||||| || || ||||| |||||||| ||||| Sbjct 131515 AGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTATC 131460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476483962682520