Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq20199 250 4e-60 >seq20199 Length=1256174 Score = 250 bits (276), Expect = 4e-60 Identities = 375/524 (72%), Gaps = 14/524 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||||| | ||| ||||| |||||| | |||| |||| || || || Sbjct 343989 TGTTCCCAATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAG-CCGAAGCATCTTTC 343931 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--ACTGGGTGTCGCTGAGCG 1455870 ||||| || || || ||||| || | | |||||| |||||| | || | || Sbjct 343930 TGGACGGCTGAAGAAGTCGATCTATCT--CAAGACGGTCGCGACTGGGAGAATCTCAACG 343873 Query 1455871 ACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATC 1455930 ||| ||| | || |||||||| ||||||||||| ||| |||||||| || || ||| Sbjct 343872 ACGGAGAGAGGCACTTCATCAAACACGTCCTCGC-TTTCTTCGCCGCATCTGACGGAATC 343814 Query 1455931 GTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTG 1455990 || |||||| || || || || ||| || || ||| | | || || ||| Sbjct 343813 GTTCTCGAGAATCTCGCTTCACGGTTCATGTCCGATGTGCAAGTCTCTGAAGCGCGTGCT 343754 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || ||||||||||||||||| || || || |||||||| || | ||| ||||| || Sbjct 343753 TTCTACGGGTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGTCTCCTCCTC 343694 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 ||||| ||| |||| ||| |||| ||||| |||||||| |||||||| || | Sbjct 343693 GACACTTACATCAAAGACAACAAAGAGAGAGACCATCTCTTTCGGGCCATCGAAACAATC 343634 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170 || | || ||||| ||| | ||||| |||||||||||| | || ||| | Sbjct 343633 CCTTGCGTCGCTAAAAAAGCCCAATGGGCCATGAAGTGGATC-----GATGGATCTC-AG 343580 Query 1456171 ACTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 ||||| || ||| | |||||| ||| || ||||||| || ||||| ||||| ||||| Sbjct 343579 ACTTTCGCTGAGAGAATCGTCGCCTTCGCTTGCGTCGAAGGTATCTTCTTCTCAGGCAGC 343520 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 |||||| | ||||| ||||||||||| || || |||||||| || Sbjct 343519 TTCTGCTCAATCTTCTGGCTCAAGAAACGAGGTCTCATGCCTGG 343476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175751278095834