Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq20510 623 1e-173 seq17269 578 4e-160 seq19338 473 1e-128 seq7960 123 3e-23 seq19441 87.8 2e-12 >seq20510 Length=252746 Score = 623 bits (690), Expect = 1e-173 Identities = 748/1014 (74%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438 |||||| | ||||||||||| | | || ||||| || ||||| ||||||||||| Sbjct 62277 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 62336 Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498 || | || |||| ||| ||| | || | || |||||| | || || || || ||| Sbjct 62337 CTATTGCTCTTTCCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 62396 Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTC 159558 | || ||||| || || || | ||||||||||| | |||||| |||||| | Sbjct 62397 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 62456 Query 159559 ACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 159618 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 62457 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 62516 Query 159619 CCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTT 159678 ||||| | ||||| || || || ||||| ||| | || || | ||| | |||||| Sbjct 62517 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 62576 Query 159679 GCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG- 159737 ||||||||||| || ||||| | |||||||||||| |||| ||||||||| ||||||| Sbjct 62577 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 62636 Query 159738 TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 159797 ||| ||| | || ||||| ||||| || || ||||||||||| |||||||||||||| Sbjct 62637 TCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 62695 Query 159798 CAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGG 159857 || || || || |||||||| ||||| ||| ||||||||||| |||||||| || Sbjct 62696 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 62755 Query 159858 GGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAA 159917 ||||| || || ||| ||||| | | || | || || || || || ||||| | || Sbjct 62756 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAA 62815 Query 159918 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCA 159977 ||| || |||||||||||||| || ||| |||| || | || ||| | || || || || Sbjct 62816 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 62875 Query 159978 TGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGC 160037 ||||||||||||||| || || || ||||||||||| || ||||| ||||| || Sbjct 62876 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 62935 Query 160038 GTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 160097 ||| | || ||||||| ||||| |||||||| |||||||| || |||||||| ||||| Sbjct 62936 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 62995 Query 160098 GCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 160157 || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| ||||| Sbjct 62996 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 63055 Query 160158 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCG 160217 || || | ||| |||||| || |||| | | ||||| ||||| ||||| || Sbjct 63056 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 63115 Query 160218 TGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTT 160277 ||| || || ||||| ||||| || | ||||| |||||||| ||||||||||| || Sbjct 63116 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 63175 Query 160278 CTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCA 160337 ||| || || || || || || || ||||| |||| ||||||||||| || ||||| Sbjct 63176 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 63235 Query 160338 ACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 || ||||||||| |||| ||||||||||| || ||||| | || ||||| || Sbjct 63236 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 63289 Score = 152 bits (168), Expect = 6e-32 Identities = 140/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 158501 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 158560 || ||||| |||||||| || |||||||| |||||||| || || ||||| |||| || Sbjct 30732 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTCGTTGATAGTCAAGGA 30673 Query 158561 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATG 158620 ||||| | || || ||||| ||| | | ||||| ||| |||||||||||||||||| Sbjct 30672 CGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 30613 Query 158621 CATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTGCTGAGTCTACACCT 158677 ||||| ||||| || ||||||||||| || || || ||||||| |||| || || || Sbjct 30612 CATGAACGTAATGCTCACAACTTCCCGCTAGACCTAGCTGCTGTTGAGGCTCCATCT 30556 >seq17269 Length=4150 Score = 578 bits (640), Expect = 4e-160 Identities = 732/1004 (73%), Gaps = 2/1004 (0%) Strand=Plus/Plus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 |||||| | ||| |||| || | || ||| | || |||| ||||| ||||| | Sbjct 2741 CTTCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 2800 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCC 157794 |||||| ||||| || | | |||||| | ||| || |||| ||| | |||||||| Sbjct 2801 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 2860 Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854 || || || ||||| || || || ||||| ||| |||| || || | || || ||||| Sbjct 2861 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 2920 Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914 || || || ||||| || |||||| ||| || || ||| | || || ||||| || Sbjct 2921 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 2980 Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974 ||||||||| ||||| |||| || ||||| || || |||||||||| |||| | || Sbjct 2981 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGT 3040 Query 157975 ATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCG 158034 | ||||| | | || | | |||||||| |||||||||||||| || ||| Sbjct 3041 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 3100 Query 158035 TTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGC 158094 | | |||||||| || ||||| ||| |||||||| ||||| || || || || | ||| Sbjct 3101 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 3160 Query 158095 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158154 || ||| | |||| || | |||||||| ||| || |||| ||||||||| || || Sbjct 3161 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 3220 Query 158155 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158214 |||||||||||| |||| ||| |||||||||| || || |||||||| ||||||||||| Sbjct 3221 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 3280 Query 158215 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 || || ||| | ||||| ||||| |||||||| || || || || ||||||||| || Sbjct 3281 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACGG 3340 Query 158275 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 158333 | || ||||| | | | || | ||||| || |||| || || || | | Sbjct 3341 TTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 3399 Query 158334 GTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCG 158393 |||| | ||||||||||||||||| || |||||||| || || || || || || || | Sbjct 3400 GTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 3459 Query 158394 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158453 | || |||||||||||||| ||| |||||||| || ||||| || || |||||| | | Sbjct 3460 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 3519 Query 158454 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 158513 | || ||||| || || || || ||||| || || | || | || ||||| |||| Sbjct 3520 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 3579 Query 158514 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158573 |||| || |||||||| |||||||| || | ||||| |||| || ||||| | || | Sbjct 3580 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 3639 Query 158574 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158633 | ||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| | Sbjct 3640 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 3699 Query 158634 CACACAACTTCCCACTGGATCTTGCTGCTGCTGAGTCTACACCT 158677 | ||||||||||| || || || ||||||| |||| || || || Sbjct 3700 CTCACAACTTCCCGCTAGACCTAGCTGCTGTTGAGGCTCCATCT 3743 >seq19338 Length=76300 Score = 473 bits (524), Expect = 1e-128 Identities = 613/840 (73%), Gaps = 9/840 (1%) Strand=Plus/Plus Query 159541 GAAGGTGCTAATTTTCTCACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCT 159600 |||||| | |||||| | || || || || | || |||||| || | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 159601 CTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGA 159660 | | |||| ||||||||||| | ||||| || || || ||||| ||| | || Sbjct 38377 TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGC 38436 Query 159661 GGGATTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTT-ATGCTACG 159719 || || || | ||||||| |||||||||| ||||| | ||||||||| ||| |||| Sbjct 38437 GGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACG 38496 Query 159720 GCAATTTGAAATTGCTCGTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGG 159779 ||||||||| ||||||| ||| | || ||||| ||||| || || |||||||| Sbjct 38497 TCAATTTGAACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGG 38556 Query 159780 TCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTT 159839 ||| |||||||||||||| | || || || |||||||| ||||| ||| ||||| Sbjct 38557 TCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGTT 38616 Query 159840 CTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAGGG 159896 |||||| |||||||| || ||||| || | ||| ||| |||| || |||| |||| Sbjct 38617 CTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCC--AAGGG 38674 Query 159897 TTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGG 159956 ||| || || ||||| | ||||| || |||||||||||||| || ||| |||| | | Sbjct 38675 TTT-CATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGC 38733 Query 159957 AGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGA 160016 || ||| | || || || ||||||||||||||| | || || || ||| ||||||| || Sbjct 38734 GGCTCTGCTATGCGCTATTCATGGTGCTACTGTA-AAAATACTTTATTTAAAGATGGTGA 38792 Query 160017 ACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGT 160076 ||||| ||||| | ||| | || ||||||| |||||| |||||||| ||||| Sbjct 38793 TGGTGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGGT 38852 Query 160077 CACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCT 160136 ||| || |||| ||| ||||| || ||||| || | ||| ||||| || ||| | ||| Sbjct 38853 CACCGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGTA 38912 Query 160137 TCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTAT 160196 |||| || ||||| ||||| || || ||| ||| || || |||| | | Sbjct 38913 ACATTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAGT 38972 Query 160197 TGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGA 160256 ||||| ||||| ||||| | | | || || ||||| ||||| ||| | ||||| || Sbjct 38973 CGGTCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGGA 39032 Query 160257 AGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGC 160316 |||||| ||||||||||| ||||| || || || || || || || ||||| |||| || Sbjct 39033 AGATCCGGAATTTGAGACTTTCTATACTAA-AATATTCTTTTAAACGAAGGTATTCGCGC 39091 Query 160317 TTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACC 160376 |||||| || || ||||| || ||||||||| |||| ||||||||||| || ||||| Sbjct 39092 TTGGATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 39151 >seq7960 Length=315 Score = 123 bits (136), Expect = 3e-23 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 160210 AACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTT 160269 ||||| ||||| || || ||||| ||||| || | |||| ||||||||||||||| Sbjct 3 AACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTACAGCGGAAGATCCTGAATTT 62 Query 160270 GAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCT 160329 ||||| ||||||||||| || || || || || || || ||||||||||| |||| || Sbjct 63 GAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGCTGGCGGCT 122 Query 160330 GCTGATCAACCACATGAAAA-CTTTATCTTCCCTGAGGAA 160368 ||||| || |||||||| | |||| |||||||| ||| Sbjct 123 CAAGATCAGCCTCATGAAAACCCTTATATTCCCTGATGAA 162 >seq19441 Length=80586 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/138 (75%), Gaps = 5/138 (4%) Strand=Plus/Plus Query 159766 ATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGT 159825 || || |||||||||| |||||||||||||| || || || || |||||||| ||| Sbjct 18201 ATCGCATTCTCTGGTCTAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGT 18260 Query 159826 CAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAG-AT--TCCTG 159882 || ||| ||||||||||| | |||||| || ||||| | || ||| | || |||| Sbjct 18261 CAATCTGGTTGGTTCTTTGCGCGTAGTTTTGGTGTAGCGACTATATTTCGTATCATCCTC 18320 Query 159883 TTGTTCCTTCAGGGTTTC 159900 || |||| |||||||| Sbjct 18321 TTTTTCC--AAGGGTTTC 18336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572871024080400