Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq17269 569 2e-157 seq20510 500 1e-136 seq19338 351 1e-91 seq7960 91.5 2e-13 >seq17269 Length=4150 Score = 569 bits (630), Expect = 2e-157 Identities = 722/993 (73%), Gaps = 0/993 (0%) Strand=Plus/Plus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 ||||| | ||| ||||| || | || || || || | || ||||| || || || Sbjct 2742 TTCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 2801 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 181100 ||||| || || | ||| | |||||| | ||| || |||| ||| | |||||||| Sbjct 2802 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 2861 Query 181101 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 181160 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 2862 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 2921 Query 181161 ATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 181220 || || || ||||| || |||| |||| || |||||| | || || || || ||| Sbjct 2922 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 2981 Query 181221 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTC 181280 |||||||| ||||| ||||||| ||||| || || |||||||||| |||| | || Sbjct 2982 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGTT 3041 Query 181281 TTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCGC 181340 | ||||| | | || | | || ||||| ||||| |||||||| || ||| Sbjct 3042 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3101 Query 181341 TTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCT 181400 | |||||||| || ||||| ||||||||| || ||||| || ||||| || ||||| Sbjct 3102 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 3161 Query 181401 GTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATC 181460 || ||| | |||| || | |||||||| ||| ||||| | ||||| || || ||| Sbjct 3162 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 3221 Query 181461 TCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCC 181520 |||||||| ||||||| ||| |||| ||||| || |||||||||||||| ||||| || Sbjct 3222 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 3281 Query 181521 TTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGT 181580 || |||||||| ||||| || |||||||| || || || || || ||||| ||||||||| Sbjct 3282 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACGGT 3341 Query 181581 TCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGT 181640 || ||||| || ||| | || | || || || |||| ||| || || | ||| Sbjct 3342 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 3401 Query 181641 TACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGT 181700 |||| ||||| ||||||||||| || |||||||| || || || |||||||| ||||| Sbjct 3402 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 3461 Query 181701 CGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCA 181760 || |||||||||||||||||| |||||||| || ||||| | || |||||| | || Sbjct 3462 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 3521 Query 181761 GCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAAC 181820 || ||||| ||||| || || ||||| || || | || | || || ||||| || ||| Sbjct 3522 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 3581 Query 181821 CTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACACC 181880 || ||||| ||||| |||||||| || | | || | ||||||||||| | || || Sbjct 3582 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 3641 Query 181881 TGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCG 181940 ||||| || | | |||||||| || || |||||||| ||||| || || || || Sbjct 3642 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 3701 Query 181941 CACAACTTCCCGCTTGATCTTGCAGCAGCTGAG 181973 |||||||||||||| || || || || | |||| Sbjct 3702 CACAACTTCCCGCTAGACCTAGCTGCTGTTGAG 3734 >seq20510 Length=252746 Score = 500 bits (554), Expect = 1e-136 Identities = 715/1004 (71%), Gaps = 2/1004 (0%) Strand=Plus/Plus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | |||| ||||| || ||||| ||||||||||| || | || Sbjct 62287 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 62346 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 62347 TTCCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 62406 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 182550 |||| || || || | ||| ||||||| | |||||| || ||| | || || || | Sbjct 62407 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 62466 Query 182551 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 182610 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 62467 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 62526 Query 182611 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 182670 | || |||| || ||||| ||| | || || || ||| ||| || |||||||||| Sbjct 62527 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 62586 Query 182671 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGA 182729 | || ||||| | || ||||| ||| | | ||||||||||||||||| ||| || | Sbjct 62587 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAA 62645 Query 182730 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTC 182789 | ||||||| ||||| || || || |||||||| |||||||| || || ||| || Sbjct 62646 TTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTT 62705 Query 182790 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 182849 || || ||||| | || || || |||||| || ||||| |||||||| ||||| Sbjct 62706 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 62765 Query 182850 ATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCAT 182909 || || | ||| | | || | || || || || || |||||| | ||||| || ||| Sbjct 62766 ATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTCAT 62825 Query 182910 ATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACA 182969 ||||||||||| || ||| ||||||| | || ||||| | ||||| ||||||| || Sbjct 62826 ATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACT 62885 Query 182970 GTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCC 183029 ||||| ||||| || | ||||||||| || ||||| ||||| || || | | Sbjct 62886 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 62945 Query 183030 ACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTC 183089 ||||| | || || || ||||| ||||| || || || || ||||||||||||||||| Sbjct 62946 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 63005 Query 183090 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183149 |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | Sbjct 63006 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACT 63065 Query 183150 GGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGAT 183209 ||| | ||| | | || |||| | | || || ||| | || || ||||| ||||| Sbjct 63066 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 63125 Query 183210 TTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAG 183269 || || || || || | ||||| |||||||| || || ||||| ||||| || || Sbjct 63126 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 63185 Query 183270 AACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAA 183329 || || ||| | || ||||| | || |||||| |||| || ||||| || |||||| Sbjct 63186 AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 63245 Query 183330 AACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 ||| | || |||||||| || |||||||| | || ||||| || Sbjct 63246 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 63289 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 181776 GGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAAC 181835 || || ||||| || || | || | || || ||||| || ||||| ||||| ||||| Sbjct 30762 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAAT 30703 Query 181836 TTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTC 181895 |||||||| || || | || | ||||||||||| | || || ||||| || | | Sbjct 30702 TTCAACCAATCAGTCGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATT 30643 Query 181896 AACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTT 181955 |||||||| || || |||||||| ||||| || || || || |||||||||||||| Sbjct 30642 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTA 30583 Query 181956 GATCTTGCAGCAGCTGAG 181973 || || || || | |||| Sbjct 30582 GACCTAGCTGCTGTTGAG 30565 >seq19338 Length=76300 Score = 351 bits (388), Expect = 1e-91 Identities = 586/840 (70%), Gaps = 9/840 (1%) Strand=Plus/Plus Query 182523 GAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCT 182582 |||||| | || ||| | || || || || | || |||||| || | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 182583 CTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGG 182642 | | |||| ||||||||||| | || || |||| || ||||| ||| | || Sbjct 38377 TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGC 38436 Query 182643 GGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTC-ATGCTTAG 182701 || | || ||| || ||| |||||||||| ||||| | || ||||| ||| | | Sbjct 38437 GGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACG 38496 Query 182702 GCAATTTGAACTTGCTCGCCTGATTGGAATCAGACCTTACAATGCGATTGCTTTTTCTGG 182761 ||||||||||||||||| || | | ||||||| ||||| || || || ||||| Sbjct 38497 TCAATTTGAACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGG 38556 Query 182762 TCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTT 182821 ||| |||||||| || || | | || || || ||||| | || || || |||||| Sbjct 38557 TCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGTT 38616 Query 182822 TTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGT---TCCTGTTGTTCCTTCAGGG 182878 || ||||| |||||||| ||||| | || | | |||| || |||| |||| Sbjct 38617 CTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCC--AAGGG 38674 Query 182879 TTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGG 182938 ||| || || |||||| | ||||| || |||||||||||||| || ||| |||||| | Sbjct 38675 TTT-CATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGC 38733 Query 182939 AGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGA 182998 || ||||| | ||||| ||||||| || ||| | ||||| || | | ||||||| || Sbjct 38734 GGCTCTGCTATGCGCTATTCATGGTGCTACTGTA-AAAATACTTTATTTAAAGATGGTGA 38792 Query 182999 ACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGT 183058 ||||| ||||| | || | | ||||| | || || || ||||| ||||| Sbjct 38793 TGGTGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGGT 38852 Query 183059 TACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTT 183118 || || || | ||||||||||||||||| |||| ||| ||| ||||||| |||||| Sbjct 38853 CACCGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGTA 38912 Query 183119 GCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCAT 183178 || | ||||||||| ||||| || || ||| | | | | | || |||| | | Sbjct 38913 ACATTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAGT 38972 Query 183179 TGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGA 183238 || || ||| | || || | | | ||||| || || || || ||| | ||||| || Sbjct 38973 CGGTCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGGA 39032 Query 183239 AGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGC 183298 |||||| || || ||||| ||||| || || || || ||| | || ||||| | || || Sbjct 39033 AGATCCGGAATTTGAGACTTTCTATACTAA-AATATTCTTTTAAACGAAGGTATTCGCGC 39091 Query 183299 TTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACC 183358 |||| | || || ||||| || ||||||||| | || |||||||| || |||||||| Sbjct 39092 TTGGATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 39151 >seq7960 Length=315 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/160 (73%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 183192 AATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTC 183251 || || ||||| ||||| || || || || || | |||| ||||||||||| || Sbjct 3 AACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTACAGCGGAAGATCCTGAATTT 62 Query 183252 GAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCT 183311 ||||| |||||||| || || || ||| | || || || | ||||||||| |||| || Sbjct 63 GAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGCTGGCGGCT 122 Query 183312 GCCGATCAACCACATGAAAA-CTTCATCTTCCCTGAAGAA 183350 ||||| || |||||||| | | || |||||||| ||| Sbjct 123 CAAGATCAGCCTCATGAAAACCCTTATATTCCCTGATGAA 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614453520148960