Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq17269 545 3e-150 seq20510 482 3e-131 seq19338 311 1e-79 seq20877 95.1 1e-14 seq21340 89.7 6e-13 >seq17269 Length=4150 Score = 545 bits (604), Expect = 3e-150 Identities = 719/994 (72%), Gaps = 2/994 (0%) Strand=Plus/Plus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 ||||| | ||| ||||| || | || || || || | || ||||| || || || Sbjct 2742 TTCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 2801 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 158498 ||||| || || | ||| | ||||| | ||| || |||| ||| | |||||||| Sbjct 2802 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 2861 Query 158499 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 158558 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 2862 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 2921 Query 158559 ATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 158618 || || || ||||| || | || |||| || |||||| | || || || || ||| Sbjct 2922 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 2981 Query 158619 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTC 158678 |||||||| ||||| ||||||| ||||| || || |||||||||| |||| | || Sbjct 2982 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGTT 3041 Query 158679 TTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCGC 158738 | ||||| | | || | | |||||||| ||||| ||||||||| | ||| Sbjct 3042 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3101 Query 158739 TTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCT 158798 | |||||||| || ||||| ||| |||||||| || || || || || || ||||| Sbjct 3102 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 3161 Query 158799 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 158858 || ||| | |||| || | |||||||| ||| || |||| ||||||||| || ||| Sbjct 3162 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 3221 Query 158859 TCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCG 158918 ||||||||||| |||| ||| |||||||||| || || |||||||| ||||||||||| Sbjct 3222 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 3281 Query 158919 TTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGA 158978 || || ||| | ||||| ||||| |||||||| || || || || ||||||||| || Sbjct 3282 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACGGT 3341 Query 158979 AGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATGG 159037 | || ||||| | | | || | ||||| || |||| || || || | || Sbjct 3342 TCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 3400 Query 159038 TTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGG 159097 ||||| ||||| |||||||||||||| || || || || || || || ||||| || || Sbjct 3401 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 3460 Query 159098 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 159157 || |||||||||||||| ||| |||||||| || ||||| || || |||||| | || Sbjct 3461 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 3520 Query 159158 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAA 159217 || ||||| || || || || ||||| || || | || | || ||||| ||||| Sbjct 3521 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 3580 Query 159218 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 159277 ||| || |||||||| |||||||| || | ||||| |||| || ||||| | || || Sbjct 3581 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 3640 Query 159278 CTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 159337 ||||| ||| | | |||||||| || |||||||||||||||||||| ||||| || Sbjct 3641 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 3700 Query 159338 ACACAACTTCCCACTCGACCTTGCTGCTGCTGAG 159371 ||||||||||| || ||||| ||||||| |||| Sbjct 3701 TCACAACTTCCCGCTAGACCTAGCTGCTGTTGAG 3734 >seq20510 Length=252746 Score = 482 bits (534), Expect = 3e-131 Identities = 722/1020 (71%), Gaps = 4/1020 (0%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 62277 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 62336 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 62337 CTATTGCTCTTTCCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 62396 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 160078 | ||| |||||||| |||||| | |||||||||||| | || ||| || ||| | Sbjct 62397 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 62456 Query 160079 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 160137 || || ||||| ||||| ||| | | | | |||||| || || || || ||||| Sbjct 62457 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 62515 Query 160138 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGT 160197 |||||| || ||||| ||||| | ||| ||| | || || || ||| |||||| Sbjct 62516 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 62575 Query 160198 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 160257 || ||||| || || ||||| |||| || || ||| | ||||| |||||||| || || Sbjct 62576 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 62635 Query 160258 -TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTG 160316 ||| || | | || ||||| ||||| || || ||||||||||| |||||||| |||| Sbjct 62636 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 62694 Query 160317 TCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 160376 | || || || || || ||| | ||||| || ||||||| || || || |||| Sbjct 62695 TTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 62754 Query 160377 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTA 160436 | || || || || ||| ||||| | | || | ||||||||||| || ||||| | | Sbjct 62755 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGA 62814 Query 160437 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCC 160496 |||| || |||||||||||||| || ||| |||| || | || ||||| | || || | Sbjct 62815 ACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTC 62874 Query 160497 ATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 160556 |||| | ||||||||| || || | | ||||||||| || |||||||| || | Sbjct 62875 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 62934 Query 160557 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 160616 | ||| | | || || | ||||| |||||||| |||||||| || |||||||| |||| Sbjct 62935 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 62994 Query 160617 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 160676 | || ||||| || |||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 62995 CACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 63054 Query 160677 TGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTC 160736 | || || | ||| | |||| | |||| | | ||||| ||| | || || | Sbjct 63055 TACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTAC 63114 Query 160737 GTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCT 160796 |||| || || ||||| || || || | ||||| |||||||| ||||||||||| | Sbjct 63115 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 63174 Query 160797 TCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACC 160856 |||| || || || || || | || ||||| | || || ||| | || || || | Sbjct 63175 TCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATC 63234 Query 160857 AACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 | || ||||| ||| |||| ||||| || || ||||| || | || ||||| ||||||| Sbjct 63235 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 63294 Score = 150 bits (166), Expect = 2e-31 Identities = 134/168 (80%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 159204 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 159263 || ||||| |||||||| || |||||||| |||||||| || || ||||| |||| || Sbjct 30732 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTCGTTGATAGTCAAGGA 30673 Query 159264 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATG 159323 ||||| | || || ||||| ||| | | |||||||| || ||||||||||||||| Sbjct 30672 CGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 30613 Query 159324 CATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAG 159371 ||||| ||||| || ||||||||||| || ||||| ||||||| |||| Sbjct 30612 CATGAACGTAATGCTCACAACTTCCCGCTAGACCTAGCTGCTGTTGAG 30565 >seq19338 Length=76300 Score = 311 bits (344), Expect = 1e-79 Identities = 590/859 (69%), Gaps = 7/859 (1%) Strand=Plus/Plus Query 160061 GAGGGTGCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCT 160120 || ||| | || ||| | || || ||||| ||||| ||| | | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 160121 CTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGG 160179 || || || || ||||||||||| || ||||| ||||| | ||| ||| | || Sbjct 38377 -TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGG 38435 Query 160180 GGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTC-ATGCTCC 160238 || | || ||| ||| || |||| ||||| ||||| |||| || || ||| | | Sbjct 38436 CGGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTAC 38495 Query 160239 GTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCT 160297 |||| |||||||| || || || || | | || ||||| ||||| || || |||||| Sbjct 38496 GTCAATTTGAACTTGCTCGATCCGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCT 38554 Query 160298 GGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGG 160357 ||||| |||||||| ||||| | || || || || ||| | ||||| || ||||| Sbjct 38555 GGTCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGG 38614 Query 160358 TTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGA 160417 || || || || ||||| || || || | ||| ||||| | | || | ||||| Sbjct 38615 TTCTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCAAGGG 38674 Query 160418 TTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGA 160477 ||||| || ||||| | ||||| || |||||||||||||| || ||| |||| | | Sbjct 38675 TTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGCG 38734 Query 160478 GCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAA 160537 || ||||| | || || ||||| | ||||||| | || || | | | ||||||| || Sbjct 38735 GCTCTGCTATGCGCTATTCATGGTGCTACTGTA-AAAATACTTTATTTAAAGATGGTGAT 38793 Query 160538 CAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTC 160597 |||||||| || | ||| | | || || | |||||| |||||||| |||||| Sbjct 38794 GGTGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGGTC 38853 Query 160598 ACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTT 160657 || || |||| ||| ||||| || ||||| || ||| ||||| || ||| | ||| Sbjct 38854 ACCGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGTAA 38913 Query 160658 CATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATT 160717 |||| || ||||| ||||| || || ||| | | || | |||| | | Sbjct 38914 CATTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAGTC 38973 Query 160718 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAA 160777 ||||| ||| | || || | | | || || ||||| || || ||| | ||||| ||| Sbjct 38974 GGTCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGGAA 39033 Query 160778 GATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCA 160837 ||||| ||||||||||| ||||| || || || || || | || ||||| | || || Sbjct 39034 GATCCGGAATTTGAGACTTTCTATACTAA-AATATTCTTTTAAACGAAGGTATTCGCGCT 39092 Query 160838 TGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCT 160897 ||| | || || || || || ||||| ||| |||| ||||| || || ||||| || Sbjct 39093 TGGATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 39152 Query 160898 AGAGGCAACGCCCTTTAAT 160916 | | ||||| ||||||| Sbjct 39153 CGTGAAAACGCTCTTTAAT 39171 >seq20877 Length=376463 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614 ||||||||||||||||| || | ||| || || || || ||||| ||| |||| Sbjct 300475 GACGCTGCTGAGGAAGCCGGAATCGATTTGCCTTACTCTTGCCGTGCCGGTTCTTGCTCG 300416 Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGA-CAGTTGACCAAAGTGACCAATCTTTCTTGGA 159673 | ||||| ||||| ||| || ||| | |||||||| |||||| |||| | || Sbjct 300415 AGCTGTGCCGGTAAAGTTGTT-GCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGA 300357 Query 159674 CGATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGT 159733 ||||| || | | |||||| ||| |||||||||||| | | |||||||| || || || Sbjct 300356 TGATGACCAGATTGGTGAAGGGTTTGTTCTCACTTGTGCCGCTTACCCTACCTCTGATGT 300297 Query 159734 AACTAT 159739 || || Sbjct 300296 TACCAT 300291 >seq21340 Length=206869 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 159540 GACCAATACATTTTAGACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGT 159599 ||||| ||||| ||||| || ||||| ||||| || || || || || || || | Sbjct 41083 GACCAGTACATATTAGATGCAGCTGAAGAAGCTGGAGTTGACTTGCCTTACTCTTGCAGA 41024 Query 159600 GCTGGTGCTTGTAGCACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGAC 159659 |||||||| ||| ||| ||||||||||||||||||| || ||| ||||| ||| Sbjct 41023 GCTGGTGCGTGTTCCACTTGTGCTGGTAAGATTGAGAAAGGTGAAGTGGACCAGTCTGAT 40964 Query 159660 CAATC-TTTCTTGGACGATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTA 159718 || |||||| || |||||||| | | |||| | | || | |||||||| | || Sbjct 40963 GGTTCGTTTCTT-GAGGATGATCACTTGGAGAAAGGTTATGTTTTGACTTGTGTGGCTTA 40905 Query 159719 CCC 159721 ||| Sbjct 40904 CCC 40902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552326110266560