Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq19642 125 1e-23 >seq19642 Length=374925 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | || | || | |||||| |||| |||||| Sbjct 361682 TCCTCCTTGATCGACATAACGAGCAGTATCGTTGAAAACACGCAGCATAGGAACAATACC 361741 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | |||||||| ||| ||| |||||||| |||| || |||||| || || Sbjct 361742 ATTAGACGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATATTATGAACTGA 361801 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || ||||| || ||| || | |||||| ||| | ||| |||||||| Sbjct 361802 GACACCAATACCTCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 361861 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || |||||||||||| ||||| | ||||||||||| Sbjct 361862 GCCTTCAATGCTATCATCTTTCATGCAGATCAGAAAACAGCT 361903 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| || ||||| | |||||| ||||| |||||||||||| | | ||| | || || Sbjct 362031 AGTTCCTGCGTTAAAGAGTGTAGGGGATGCATGAGTGAACCATCTCTGAGACATCAAATG 362090 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| || | || || || || ||||| || || || || | || || | ||| | Sbjct 362091 GTAAGTCTTGATTGCAGAATCAATATCGTCCTTGTGGATGCCAACAGCAACCCTCATAAG 362150 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || ||||| | ||| || ||| || | |||||| ||||| ||| | || || Sbjct 362151 CATGTGTTGAGGCCTTTCAACAACTTTCCCATGAACTTTCAAGAGGTAAGATCTCTCAAG 362210 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||||||||||| || | ||| ||| || | ||||| ||||| Sbjct 362211 TGTTTTAAACCCAAAGTAATCATATTCAAAATCACGGTCGTAGATAAT 362258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686725421109480