Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq20199 136 3e-27 seq21007 98.7 8e-16 seq19402 95.1 1e-14 seq18862 82.4 6e-11 >seq20199 Length=1256174 Score = 136 bits (150), Expect = 3e-27 Identities = 387/584 (66%), Gaps = 18/584 (3%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| || || | | | || ||| | |||||||| ||||| | || || || | Sbjct 343989 TGTTCCCAATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCTTTCT 343930 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACT-TAGCACATTGGATTGCATTAAAACCA 43825 |||| || |||||||| ||| | || ||||| | || | ||| | || ||| | Sbjct 343929 GGACGGCTGAAGAAGTCGATCTATCTCAAGACGGTCGCGACTGGGA--GAATCTCAACGA 343872 Query 43826 CA-AGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 | ||| | || || || || | || || || || || ||||| || || Sbjct 343871 CGGAGAGAGGCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGT 343812 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 || ||| | | | ||||| | || || ||| | | ||||| || ||| Sbjct 343811 TCTCGAGAATCTCGCTTCACGGTTCATGTCCGATGTGCAAGTCTCTGAAGCGCGTGCTTT 343752 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 || ||||| || || || || || ||||| || ||||| ||||||||||| || | || Sbjct 343751 CTACGGGTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGTCTCCTCCTCGA 343692 Query 44005 TACGTACATCAAAGATGGGCACGAGA---AGCATCGATTGTTTAATGCGATAGAAACAGT 44061 || ||||||||||| | |||| | |||| | ||| || || |||||| | Sbjct 343691 CACTTACATCAAAGACAACAAAGAGAGAGACCATC---TCTTTCGGGCCATCGAAACAAT 343635 Query 44062 ACCT-GCGAT--TAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC 44118 ||| ||| |||| ||||| | |||||| | || ||||| || | | | | Sbjct 343634 CCCTTGCGTCGCTAAA---AAAGCCCAATGGGCCATGAAGTGGATCGATGGATCTCAGAC 343578 Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGT 44177 ||| | || || | ||||| || || || ||||| || ||||| ||||| | | | Sbjct 343577 TTTCGCTGAGAGAATCGTCGCCTTCGCTTGCGTCGAAGGTATCTTCTTCTCAGGCAGCTT 343518 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 ||| | || || ||| | |||||||||||| | |||||||||||||| || || || | Sbjct 343517 CTGCT-CAATCTTCTGGCTCAAGAAACGAGGTCTCATGCCTGGGTTGACTTTCTCCAACG 343459 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 |||| || || || ||||||||||| |||||||| || ||| Sbjct 343458 AGTTGATCTCACGAGACGAAGGCTTACACTGCGATTTCGCCTGC 343415 >seq21007 Length=954693 Score = 98.7 bits (108), Expect = 8e-16 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| ||||| |||||| ||| || ||||| || | ||| | | |||||| Sbjct 134278 ATCCTGATGATCGACGGATAATAATGTCGGCTTGGAATCCTTCTGACCTTAAGCTGATGG 134337 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 || | || || || || |||| |||||||| ||| ||||| || || ||||||| Sbjct 134338 CACTTCCTCCATGCCACATGTTTGCGCAGTTTTATGTTGCAAATGGAGAGCTTTCATGTC 134397 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || ||||||| | |||| ||| ||||| || || || ||||||||||| || Sbjct 134398 AAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCGTTTAACATTGC 134449 >seq19402 Length=197664 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| || ||||| ||| ||| || ||||| || | || | | ||||||| Sbjct 22794 ATCCTGATGATCGGCGTATTATACTGTCGGCTTGGAATCCTTCTGATCTCAAGTTGATGG 22735 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAACTGTCATGT 41111 || | || || || ||| |||| ||||| || || ||| | || || || |||||| Sbjct 22734 CACTTCCTCCATGCCATATGTTTGCACAGTTCTATGTG-GCAGAAGGGGAGCTCTCATGT 22676 Query 41112 CAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTAT 41171 ||| ||||||| | |||| ||||||||||| || || ||||||||||| || ||| Sbjct 22675 CAAATGTATCAGCGTTCAGCGGACATGGGACTTGGTGTGCCGTTTAACATTGCTTCCTAT 22616 Query 41172 GCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTT 41225 |||| || |||| ||| | || || | |||| | |||||||| ||| Sbjct 22615 TCTCTTCTTACGTGCATGCTAGCTCATTTGTGCAATCTTGTTCCTGGTGATTTT 22562 >seq18862 Length=32547 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| || ||||| ||| | | || |||| || | || | | ||||||| Sbjct 11805 ATCCTGATGATCGGCGTATTATACTATCGGCTCGGAATCCGTCTGATCTCAAGTTGATGG 11864 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAACTGTCATGT 41111 || | || || || ||| |||| |||||||| || ||| | || || || |||||| Sbjct 11865 CACTTCCTCCATGCCATATGTTGCA-CAGTTTTATGTG-GCAGAAGGAGAGCTCTCATGT 11922 Query 41112 CAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTAT 41171 ||| |||||| | |||| ||||||||||| || || ||||||||||| || || Sbjct 11923 CAAACGTATCAGCGTTCAGTGGACATGGGACTTGGTGTGCCGTTTAACATTGCTTCCTAC 11982 Query 41172 GCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTT 41225 |||| || ||| ||| | || ||||| |||| | |||||||| ||| Sbjct 11983 TCTCTTCTTACGAGCATGCTAGCTCACGTGTGCAATCTTGTTCCTGGTGATTTT 12036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397352546798785