Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq20422 158 1e-33 seq20655 109 5e-19 seq19059 109 5e-19 seq18898 105 6e-18 seq19979 93.3 4e-14 seq19630 86.0 5e-12 >seq20422 Length=233597 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| |||| ||||| ||||| || | |||||| || || ||||||||||| ||| Sbjct 131139 TGCCTCCACGCAGACGCAACACCAAGTGAAGCGTAGACTCCTTCTGAATATTGTAATCGG 131080 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| | || || ||||| || || ||| | ||||||||||| |||||||| | Sbjct 131079 CCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAG 131020 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||||||| || ||||||| ||| | | | || | |||||| | | ||||| Sbjct 131019 GAATACCCTCTTTGTCCTGGATCTTGGCTTTAACGTTGTCAATAGTGTCGGAGCTTTCAA 130960 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || | ||| |||| || |||||||| || || |||||||| |||||| Sbjct 130959 CCTCCAAAGTGATAGTCTTTCCCGTCAGGGTCTTGACAAAGATCTGCATA 130910 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 |||||| || || || |||||||| ||||||||| | | |||| ||||||||||||| Sbjct 130658 ATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCGGCTAAGGTGCGACCGTCTTCGAGCTG 130599 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || || ||| | ||||| | ||| |||||||| || | |||||||||||| |||||| Sbjct 130598 CTTGCCAGCGAAGATGAGCCTCTGCTGATCCGGAGGGATACCCTCTTTATCCTGGATCTT 130539 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 || | | | || | ||||| | | |||||| || | ||| || | || || || Sbjct 130538 TGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCAACCTCCAAAGTGATGGTCTTTCCGGT 130479 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || |||||||| ||||| Sbjct 130478 GAGAGTCTTAACAAAGATCTGCAT 130455 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG- 27077 ||||||| |||| ||||| ||||| || | ||||| || || ||||| ||||||||| Sbjct 131367 TGCCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCGG 131308 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | || ||| | || |||||||| || || ||| | ||||||||||| || || || Sbjct 131307 CTAAAGT-GCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGA 131249 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||| || ||||| |||||| || | | | || | ||||| | | || Sbjct 131248 GGAATACCTTCCTTATCCTGTATCTTGGCCTTGACGTTATCGATGGTGTCAGAGCTCTCT 131189 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||| | || || |||| || || |||||||| ||||| Sbjct 131188 ACCTCGAGGGTTATTGTCTTACCAGTCAAGGTCTTGACAAAGATCTGCAT 131139 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||| ||||||||| | | |||| | || || Sbjct 131575 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGACCATCCTCA 131516 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | ||||||||||| || ||||| || | || || ||||| | Sbjct 131515 AGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTATCCTGG 131456 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | | || | ||||| | | || || || || || || | ||| Sbjct 131455 ATCTTGGCCTTCACGTTATCAATCGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTG 131396 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||| ||||| Sbjct 131395 CCGGTAAGCGTCTTCACAAAGATCTGCAT 131367 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTC 27091 ||||||||||| || | || || || ||||| ||||||||||| || ||||| || | Sbjct 130897 CGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCAGCCAATGTTCTGC-C 130839 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 |||||| ||||| || || ||| | || | | ||| || ||||| || | |||||| || Sbjct 130838 GTCTTCAAGCTGCTTCCCAGCGAAGATCAATCTCTGCTGGTCCGGAGGGATACCCTCCTT 130779 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || ||||| || | | || | || || | | ||||| || | ||| || Sbjct 130778 GTCTTGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCAACCTCCAAAGTGAT 130719 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || |||| || || |||||||| |||||| Sbjct 130718 AGTCTTTCCGGTCAATGTCTTGACAAAGATCTGCATA 130682 >seq20655 Length=190867 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || || | ||||| ||||| || | || || || || || || ||||||||| Sbjct 173760 GCCACCACGGAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 173819 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | | || | ||||| ||||| || || ||| | ||||||||||| || ||||| || Sbjct 173820 CAAGGTACGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 173879 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || ||||| |||||| ||||| | | || | ||||| | | || || Sbjct 173880 AATACCTTCCTTATCTTGGATCTTAGCTTTCACGTTATCAATGGTGTCGGAGCTCTCCAC 173939 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| || | || || |||| ||||| || ||||| ||||| Sbjct 173940 CTCTAGAGTGATGGTCTTCCCTGTCAATGTTTTAACGAAGATCTGCAT 173987 >seq19059 Length=274371 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || || | ||||| ||||| || | || || || || || || ||||||||| Sbjct 257264 GCCACCACGGAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 257323 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | | || | ||||| ||||| || || ||| | ||||||||||| || ||||| || Sbjct 257324 CAAGGTACGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 257383 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || ||||| |||||| ||||| | | || | ||||| | | || || Sbjct 257384 AATACCTTCCTTATCTTGGATCTTAGCTTTCACGTTATCAATGGTGTCGGAGCTCTCCAC 257443 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| || | || || |||| ||||| || ||||| ||||| Sbjct 257444 CTCTAGAGTGATGGTCTTCCCTGTCAATGTTTTAACGAAGATCTGCAT 257491 >seq18898 Length=1351152 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || | || | ||| || || || ||||||||||| || | | || || Sbjct 748873 CGCAACACAAGGTGGAGCGTGGACTCCTTCTGAATATTGTAATCCGCGAGAGTACGTCCG 748814 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||||||||| |||||||| | ||||| | ||| || || || || | ||||||||| Sbjct 748813 TCTTCGAGCTGCTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCTTTA 748754 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| ||| | | | || | ||||| | | || ||||| || || || Sbjct 748753 TCTTGGATCTTTGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCGACTTCGAGGGTGATG 748694 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | |||||| |||| ||| || |||||||| |||||| Sbjct 748693 GTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCATA 748658 >seq19979 Length=600886 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || || || || || || ||||| ||| || |||| | Sbjct 465551 CGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAATGTGCGACCA 465492 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||| || || ||| | ||||||||||| || ||||| || | ||| ||||| Sbjct 465491 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCTTTG 465432 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || ||| ||| | | | || | ||||| | | || || || ||||| || Sbjct 465431 TCTTGAATTTTGGCTTTTACGTTGTCGATGGTGTCGGAGCTCTCCACCTCAAGAGTGATG 465372 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 | || || |||| ||| || || ||||| |||||| || Sbjct 465371 GTCTTCCCGGTCAAAGTCTTAACGAAGATCTGCATACCT 465333 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CT 27079 ||||| || | ||||| ||||| || | || || || |||||||| ||||||||| || Sbjct 475201 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCT 475142 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| ||| | || || ||||| || || ||| | |||||||||||||| ||||| || Sbjct 475141 AGTGT-GCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCCGGAGG 475083 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || |||||| || | | || | ||||| | ||||| Sbjct 475082 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCGGAACTCTCAAC 475023 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | || || || || || || |||||||| |||||| Sbjct 475022 CTCCAGTGTGATCGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCATA 474974 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||||||| | ||||| || || || || |||||||| || |||| | Sbjct 465779 CGCAACACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCA 465720 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || || ||| | ||||||||||| || ||||| || | || || || Sbjct 465719 TCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTG 465660 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||| |||| | | || | ||||| | |||||||| ||||| || Sbjct 465659 TCCTGAATCTTAGCCTTCACGTTATCAATGGTGTCAGAACTCTCAACTTCAAGAGTGATC 465600 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || ||||||| || || || || || |||||| Sbjct 465599 GTCTTTCCCGTCAAGGTCTTAACGAAAATCTGCATA 465564 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||| ||||| || || | || | || || Sbjct 475411 ACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGACCATCCTCA 475352 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||||||||| || ||||| || | || || || || | Sbjct 475351 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGG 475292 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | | || | ||||| | | |||||||| || || || | || Sbjct 475291 ATCTTGGCCTTCACGTTATCAATGGTGTCAGAGCTCTCAACTTCGAGGGTGATTGTCTTT 475232 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || || |||||||| |||||| || Sbjct 475231 CCGGTAAGGGTCTTGACAAAGATCTGCATACCT 475199 >seq19630 Length=159711 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || || |||||||| || | || | |||||||||||||| |||||| | | Sbjct 121543 CTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTTCCGGCGAAGA 121602 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 | || | ||| |||||||| || | || ||||| || ||||||| || | | | Sbjct 121603 TCAGTCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGT 121662 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | ||||| | || || || || || || || | ||||| || || |||||||| | Sbjct 121663 CGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGA 121722 Query 27238 AGATTTGCAT 27247 |||| ||||| Sbjct 121723 AGATCTGCAT 121732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424823794488984