Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq20251 136 5e-27 seq20837 131 2e-25 seq19542 107 2e-18 seq18741 100 4e-16 >seq20251 Length=854191 Score = 136 bits (150), Expect = 5e-27 Identities = 301/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | |||| ||||| ||||| | | || || || Sbjct 530375 CGGTCAAAACGCCCAGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTAGCA 530434 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | || || ||||||||||| || || | |||||| Sbjct 530435 GCAACTACGATAACACCAGTGTTACCCTCGAAACCATCCATCTCCGTCAGGAGCTGATTA 530494 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || |||||||| |||||||| || |||| |||| | | |||| | || Sbjct 530495 AGCGTCTGTTCTCTTTCATCATTGCCT---CCACCAATTCCAGTTCCTCTTTGCCTACCA 530551 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||| | || ||||| || || |||||| ||| ||| || Sbjct 530552 ACAGCATCTATTTCATCCACAAAAACAATGCAGGGAGCATTTTCCTTGGCTTTTTTGAAA 530611 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 |||||||| |||||| ||||| ||||| || |||||||| ||||| | | | ||| Sbjct 530612 AGATCGCGGACCCTTGAAGCACCAACACCGACGAACATCTCAACAAACTCAGAACCCGAG 530671 Query 11747 CACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| | ||| || ||| | |||||| ||||||||| || | | ||| |||| Sbjct 530672 --ATGGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTTTC 530729 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAAT 11864 | ||||| || ||| | || || | ||| ||||||| ||||||| || Sbjct 530730 CAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACGGCAGTGA 530789 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 | ||||| || | ||| | ||| ||||| Sbjct 530790 ACCTCTCAGGCTTCTTCAAAAACTCCAC 530817 >seq20837 Length=368380 Score = 131 bits (144), Expect = 2e-25 Identities = 200/281 (71%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || |||||||| || ||||| |||||||||||| || Sbjct 291663 AAACCCATCCATCTCAGTCAACAACTGATTAATCGTCTGTTCCCTCTCATCATTTCCT-- 291606 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | ||||| |||||||||||||||||||| |||||| Sbjct 291605 CCTCCCATCCCAGCCCCTCTCTGCCTACCCACAGCATCAATCTCATCAATGAAAACAATA 291546 Query 11657 CATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || || |||||| || | ||||| | ||| | ||| || ||||| |||| Sbjct 291545 CAAGG--AGCTTTCGCCTTAGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCAACAC 291488 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 ||||||| | ||||||||| | | || | || || ||| || || | ||| | Sbjct 291487 CAACAAAAAGCTCCACAAACTCAGAAGCCGCACAAGAGAAGAACGGTACTCCAGCTTCTC 291428 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 | || | |||| || | ||| ||||| |||||||| ||| Sbjct 291427 CAGCCACCGCTCTAGCCAAGAGAGTCTTACCCGTACCAGGC 291387 >seq19542 Length=58103 Score = 107 bits (118), Expect = 2e-18 Identities = 194/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||||||||||||||| || | | |||||||| || |||||||||||||| || | Sbjct 19497 AAAGCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCTCTCTCATCGTT--CCCA 19440 Query 11599 CATACC--ACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | || |||||| | | |||| | || || |||||||| ||||| || || |||||| Sbjct 19439 CCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATTTCATCTATAAAAACAATA 19380 Query 11657 CATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || || |||||| || | ||||| | ||| | |||||| ||||| |||| Sbjct 19379 CAAGG--AGCTTTCGCCTTCGCCTTCTCAAATAAATCCCTAACCCTAGAAGCACCAACAC 19322 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 ||||||| | ||| ||||| | | |||| ||| | ||| || || || ||| | Sbjct 19321 CAACAAAAAGCTCAACAAACTCAGAAGCAGCACACGAAAAGAACGGCACTCCTGCTTCTC 19262 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | |||| || | || ||||| ||||| || || Sbjct 19261 CAGCCACAGCTCTAGCCAAAAGCGTCTTACCCGTTCCAGG 19222 >seq18741 Length=287810 Score = 100 bits (110), Expect = 4e-16 Identities = 224/335 (67%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | || || || |||| || | ||| || || | | ||||| Sbjct 95304 TCAAGAATGTCAGCTCTGTTGGTTGCAGCAACCACGATAATACCGGTATTACCTTCAAAT 95245 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | ||||| | || |||||||| |||||||| || | Sbjct 95244 CCATCCATCTCAGTTAGAAGCTGATTCAGAGTCTGTTCTCTTTCATCATTACCTCC---A 95188 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | || || |||||||| ||||| | |||||||| || Sbjct 95187 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCCACAAAGACAATGCAA 95128 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||||| ||| | | || ||||| || || || |||||| ||||||||| Sbjct 95127 GGAGCGTTTTCCTTGGCTTTCTTGAAAAGATCACGGACTCTCGAGGCACCAACACCAACA 95068 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 |||||||| ||||| | | ||||| || ||| || ||| | |||||| || Sbjct 95067 AACATCTCAACAAACTCAGAACCAGAGATGGAGAAGAAAGGCACACCAGCTTCACCAGCA 95008 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || ||| || | || || || || ||||| || Sbjct 95007 ATAGCTTTCGCCAAAAGCGTTTTCCCGGTACCAGG 94973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627864339007200