Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq20199 98.7 1e-15 seq20837 91.5 2e-13 seq19542 91.5 2e-13 >seq20199 Length=1256174 Score = 98.7 bits (108), Expect = 1e-15 Identities = 178/256 (70%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || ||||| | || || ||||| || || ||||||||||| || ||| Sbjct 343437 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAAGTCAACCCAGGCATGAGACCTCGTTTC 343496 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | || || ||| ||||||||||| || || || || ||||| Sbjct 343497 TTGAGCCAGAAGATTGAGCAGAAGCTGCCTGAGAAGAAGATACCTTCGACGCAAGCGAAG 343556 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || | |||||| || | | || | ||| | ||||||||| ||||| || Sbjct 343557 GCGACGATTCTCTCAGCGAAAGTCTGAGA---TCCATCGATCCACTTCATGGCCCATTGG 343613 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 130271 || ||||| ||| || |||| || | ||| || |||||| | | ||| | | || Sbjct 343614 GCTTTTTTAGCGACGCAAGGGATTGTTTCGATGGCCCGAAAGAGATGGTCTCTCTCTTTG 343673 Query 130272 ATGGATCTTTGATGTA 130287 || ||||||||||| Sbjct 343674 TTG--TCTTTGATGTA 343687 >seq20837 Length=368380 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/278 (68%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| | ||||| || || ||||| | |||||||| | Sbjct 291663 AAACCCATCCATCTCAGTCAACAACTGATTAATCGTCTGTTCCCTCTCATCATTTCC--T 291606 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | ||| |||| || || ||||| ||||| |||||||| ||| Sbjct 291605 CCTCCCATCCCAGCCCCTCTCTGCCTACCCACAGCATCAATCTCATCAATGAAAACAATA 291546 Query 14270 CATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 || || || | || ||||| | ||| | ||||| ||||| ||||| Sbjct 291545 CAAGGAGCTTTCGCCTTAGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCAACACCA 291486 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 ||||| | ||||||||| | | || | ||| || ||| || || || ||| || Sbjct 291485 ACAAAAAGCTCCACAAACTCAGAAGCCGCACAAGAGAAGAACGGTACTCCAGCTTCTCCA 291426 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | |||| || | ||| ||||| ||||| || || Sbjct 291425 GCCACCGCTCTAGCCAAGAGAGTCTTACCCGTACCAGG 291388 >seq19542 Length=58103 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||||||||||||||||||||| || ||||| || || ||||| | ||||| ||| || Sbjct 19497 AAAGCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCTCTCTCATCGTTCCCA-- 19440 Query 14212 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | || ||| || | | |||| |||| || || ||||||||||| || ||||| ||| Sbjct 19439 CCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATTTCATCTATAAAAACAATA 19380 Query 14270 CATGGTTGATTTTCACGGGCAACT--TCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 || || |||| | | || ||||| | ||| | || || ||||| |||| Sbjct 19379 CAAGG--AGCTTTCGCCTTCGCCTTCTCAAATAAATCCCTAACCCTAGAAGCACCAACAC 19322 Query 14328 CCACAAACATCTCCACAAA 14346 | ||||| | ||| ||||| Sbjct 19321 CAACAAAAAGCTCAACAAA 19303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618270100992920