Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq20199 152 6e-32 seq20837 123 3e-23 seq18741 114 2e-20 seq19542 100 3e-16 seq20251 91.5 2e-13 >seq20199 Length=1256174 Score = 152 bits (168), Expect = 6e-32 Identities = 377/569 (66%), Gaps = 5/569 (1%) Strand=Plus/Minus Query 94370 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 94429 ||||||| | ||||||| | | || || || ||||||| | || ||||| || Sbjct 344001 ACAGATTCTGTATGTTCCCAATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAGCCG 343942 Query 94430 AAATGAGTAATTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGA 94489 || | ||||| |||||||| || ||||| || | || ||| ||| ||| Sbjct 343941 AAGCATCTTTCTGGACGGCTGAAGAAGTCGATCTATCTCAAGACGGTCGCGACTGGGAGA 343882 Query 94490 CTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCG 94549 ||| || || || | | | ||||| ||| || |||| || ||||| || | ||| | Sbjct 343881 ATCTCAACGACGGAGAGAGGCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTG 343822 Query 94550 ATGGAATTGTTTTTGAGAATATCAATAACAACTTTGCTGAT-GAGGTGCAATCCTCTGAA 94608 | ||||| ||| | |||||| || | || || || || |||||| ||||||| Sbjct 343821 ACGGAATCGTTCTCGAGAATCTCGCTT-CACGGTTCATGTCCGATGTGCAAGTCTCTGAA 343763 Query 94609 GCGAGATCCTTCTATGCGTATCAGTGTCATAATGAAATGGTGCATGGGGAGACATACAGT 94668 ||| | | ||||| | || ||| | ||| | | || ||||| |||||| Sbjct 343762 GCGCGTGCTTTCTACGGGTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGT 343703 Query 94669 AAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATC 94728 ||| | |||| || || || || |||| | || |||||| |||||| Sbjct 343702 CTCCTCCTCGACACTTACATCAAAGACAACAAAGAGAGAGACCATCTCTTTCGGGCCATC 343643 Query 94729 CAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG 94788 ||||| | || || | || ||||| | ||||| ||||||||| | ||| | Sbjct 343642 GAAACAATCCCTTGCGTCGCTAAAAAAGCCCAATGGGCCATGAAGTGGATCGATGGA--- 343586 Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848 || | | || |||||| || || |||| || || || || || |||||||||||||| Sbjct 343585 TCTCAGACTTTCGCTGAGAGAATCGTCGCCTTCGCTTGCGTCGAAGGTATCTTCTTCTCA 343526 Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 || ||||||| | || | ||||||||||| |||||||||||||| || | ||| Sbjct 343525 GGCAGCTTCTGCTCAATCTTCTGGCTCAAGAAACGAGGTCTCATGCCTGGGTTGACTTTC 343466 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||||||||| | ||||| || ||||| || Sbjct 343465 TCCAACGAGTTGATCTCACGAGACGAAGG 343437 >seq20837 Length=368380 Score = 123 bits (136), Expect = 3e-23 Identities = 236/340 (69%), Gaps = 12/340 (4%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| | |||| | |||||| || || | |||| | ||| | | | | ||| Sbjct 291720 ATCAAGAACATCAGGTCTATTCGTAGCTGCCAAAACAATCACACCAGAGTTACCAGAAAA 291661 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||||| ||||| | || ||||| || ||||||| |||||||| || | | Sbjct 291660 CCCATCCATCTCAGTCAACAACTGATTAATCGTCTGTTCCCTCTCATCATTTCCT--CCT 291603 Query 9676 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| ||||| | | ||| | ||||| |||||||||||||||||||| || || || Sbjct 291602 CCCATCCCAGCCCCTCTCTGCCTACCCACAGCATCAATCTCATCAATGAAAACAATACAA 291543 Query 9734 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCC--ACACC 9789 || |||||| | |||| ||| | ||||| || || || | ||| | ||||| Sbjct 291542 GGAGC--TTTCGCCTTAGCCTTCTCAAACAAATCCC-TA-ACTCTAGACGCACCAACACC 291487 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 |||||| | ||||||||| | | || | ||| || ||| || || || ||| || Sbjct 291486 AACAAAAAGCTCCACAAACTCAGAAGCCGCACAAGAGAAGAACGGTACTCCAGCTTCTCC 291427 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 || | |||| || | ||||||||||||||||| ||| Sbjct 291426 AGCCACCGCTCTAGCCAAGAGAGTCTTACCCGTACCAGGC 291387 >seq18741 Length=287810 Score = 114 bits (126), Expect = 2e-20 Identities = 282/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || ||| | | || || || || | || | |||||| || | | ||||| Sbjct 95304 TCAAGAATGTCAGCTCTGTTGGTTGCAGCAACCACGATAATACCGGTATTACCTTCAAAT 95245 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | ||| || || | ||| ||||| | ||||||||| || | Sbjct 95244 CCATCCATCTCAGTTAGAAGCTGATTCAGAGTCTGTTCTCTTTCATCATTACCT---CCA 95188 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| || | | | |||| | || || |||||||| ||||| | ||||| ||||| Sbjct 95187 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCCACAAAGACAATGCAA 95128 Query 9734 GGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||||| || ||| ||| ||||| || || | | ||| || |||||||| Sbjct 95127 GGAGCGTTTTCCTTGGCTTTCTTGAAA-AGATCACGGACTCTCGAGGCACCAACACCAAC 95069 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | | | | || | || ||| || ||| || |||||| | Sbjct 95068 AAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAG 95010 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| ||| || | ||| || || || ||||| || ||| ||||| ||||| Sbjct 95009 CAATAGCTTTCGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACACCTT 94950 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 || ||| || ||| || | | |||||||| | ||| ||||| || |||| || Sbjct 94949 TCGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCAACAACTT 94890 Query 9972 C 9972 | Sbjct 94889 C 94889 >seq19542 Length=58103 Score = 100 bits (110), Expect = 3e-16 Identities = 242/359 (67%), Gaps = 12/359 (3%) Strand=Plus/Minus Query 9536 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9595 || || | ||| ||||| ||||| | ||| | ||| ||||| || | ||||| Sbjct 19574 CCCGGTCTAAGAAGCGCAGAGTCAAGAACATCCGGTCTATTAGTCGCAGCCAAGACAATG 19515 Query 9596 ATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCC 9655 | ||| | | | | ||| ||||||||||| |||||||| || |||||||| ||||| Sbjct 19514 ACACCAGAATTACCAGAAAAGCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCT 19455 Query 9656 CGTTCATCATTCGCTGGCATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCT 9713 | ||||| ||| | | | || |||||| | | |||| | || || |||||||| | Sbjct 19454 CTCTCATCGTTCCC--ACCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATTT 19397 Query 9714 CATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTAC 9771 |||| || || || || || || |||||| || || ||||| | ||||| || Sbjct 19396 CATCTATAAAAACAATACAAGG--AGCTTTCGCCTTCGCCTTCTCAAATAAATCCC-TA- 19341 Query 9772 ACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATG 9829 || || | || || ||||||||||| | ||| ||||| | | || | ||| | | Sbjct 19340 ACCCTAGAAGCACCAACACCAACAAAAAGCTCAACAAACTCAGAAGCAGCACACGAAAAG 19281 Query 9830 AAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || || | ||| || || | |||| || | ||| ||||||||||| || || Sbjct 19280 AACGGCACTCCTGCTTCTCCAGCCACAGCTCTAGCCAAAAGCGTCTTACCCGTTCCAGG 19222 >seq20251 Length=854191 Score = 91.5 bits (100), Expect = 2e-13 Identities = 320/494 (65%), Gaps = 12/494 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || || || | || | ||| ||||| ||||| | | || || || Sbjct 530375 CGGTCAAAACGCCCAGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTAGCA 530434 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | || |||||||||||||| |||| || || ||| Sbjct 530435 GCAACTACGATAACACCAGTGTTACCCTCGAAACCATCCATCTCCGTCAGGAGCTGATTA 530494 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || ||||| | ||||||||| || |||| |||| | | |||| | || Sbjct 530495 AGCGTCTGTTCTCTTTCATCATTGCCT---CCACCAATTCCAGTTCCTCTTTGCCTACCA 530551 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || ||||| | || || ||||| || |||||| || || || Sbjct 530552 ACAGCATCTATTTCATCCACAAAAACAATGCAGGGAGCATTTTCCTTGGCTTTTTTGAAA 530611 Query 9761 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 ||||| || || |||| || || ||||| || |||||||| ||||| | | | | Sbjct 530612 AGATCGCG--GACCCTTGAAGCACCAACACCGACGAACATCTCAACAAACTCAGAACCCG 530669 Query 9819 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 | || | | |||||| ||| | |||||| || |||||| || | | || || Sbjct 530670 -AGATGGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTTT 530728 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 9937 || ||||| || ||| | ||||| ||||| || ||| ||| ||| || | Sbjct 530729 CCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACGGCAGTG 530788 Query 9938 TATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCA 9997 | |||||||| | ||| | ||| ||||| | ||| || || | ||||| | ||| Sbjct 530789 AACCTCTCAGGCTTCTTCAAAAACTCCACCACTTCCATGAAATCTTGCTTGGCTTCATCA 530848 Query 9998 ATCCCCTCAACATC 10011 | || ||||||| Sbjct 530849 ACTCCAGCAACATC 530862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583105091238680