Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq20199 123 3e-23 >seq20199 Length=1256174 Score = 123 bits (136), Expect = 3e-23 Identities = 314/466 (67%), Gaps = 20/466 (4%) Strand=Plus/Minus Query 59658 GATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTC 59717 || ||||| || ||||| ||| ||| ||| |||||||| ||||| || |||||| Sbjct 343891 GACTGGGAGAATCTCAACGACGGAGAGAGGCACTTCATCAAACACGTCCTCGCTTTCTTC 343832 Query 59718 GCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAG---GATGTC 59774 || || ||| ||||| || | || ||| | | | || ||| | | ||||| Sbjct 343831 GCCGCATCTGACGGAATCGTTCTCGAGAATCTCGC--TTCACGGTTC-ATGTCCGATGTG 343775 Query 59775 CAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTC 59833 || | | || || || | ||||||| || ||| ||| | ||| ||||||||| Sbjct 343774 CAAGTCTCTGAAGCGCGTGCTTTCTACGGGTTCCAGATCGCG-ATTGAGAATATCCACTC 343716 Query 59834 CGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCT 59893 |||| |||| ||| | |||| | | |||| || |||||| | ||| Sbjct 343715 GGAGATGTACAGTCTCCTCCTCGACACTTACATCAAAGACAACAAAGAGAGAGACCATCT 343656 Query 59894 GTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGT 59952 || || ||||| || || |||| || || ||||||| ||||||||||| ||| Sbjct 343655 CTTTCGGGCCATCGAAACAATCCCTTGC-GTCGCTAAAAAAGCCCAATGGGCCATGAAGT 343597 Query 59953 GGAT-GAGTCCTGGAGCATCA----TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGA 60007 |||| || |||| | ||| || || | | || | || || || ||||| || Sbjct 343596 GGATCGA----TGGATC-TCAGACTTTCGCTGAGAGAATCGTCGCCTTCGCTTGCGTCGA 343542 Query 60008 AGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCAT 60067 ||| ||||||||||| ||| ||||| | || ||||||||||| || || || ||||| Sbjct 343541 AGGTATCTTCTTCTCAGGCAGCTTCTGCTCAATCTTCTGGCTCAAGAAACGAGGTCTCAT 343482 Query 60068 GCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 ||| || ||| ||||||||||||| |||| || || ||||| ||| Sbjct 343481 GCCTGGGTTGACTTTCTCCAACGAGTTGATCTCACGAGACGAAGGC 343436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548378364448080