Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq21029 91.5 2e-13 seq20271 91.5 2e-13 seq19327 89.7 6e-13 seq18933 87.8 2e-12 seq21172 86.0 7e-12 seq19392 86.0 7e-12 seq18930 86.0 7e-12 seq18451 86.0 7e-12 seq18716 84.2 2e-11 >seq21029 Length=576763 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 410106 CTGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 410047 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 410046 CTGAGCTACGAGAGC 410032 >seq20271 Length=78964 Score = 91.5 bits (100), Expect = 2e-13 Identities = 203/296 (69%), Gaps = 19/296 (6%) Strand=Plus/Plus Query 124484 CACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGG 124543 ||||| || |||||| || | |||| | ||| | || | | |||| |||| || || Sbjct 42606 CACCTGGAGAAACTCCTCGACGGTGTGTGACTCCTCAGTTGCGACCACGTAATCATCTGG 42665 Query 124544 AATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTC 124603 | |||||| | ||| |||||||| || | ||||||||| ||||| |||||||| Sbjct 42666 TTTGTCCTGCTGGAGCATGAGCCACATAGCCTCCACGTAGTCCCCTGCGAATCCCCAGTC 42725 Query 124604 GCGCTTG--GCATCCAGGTTTCCGAGCTCGA--TTGGCTTGG---CCGTC-TTGTTCCAC 124655 | ||| || | | ||||||||| || |||| || ||| | ||| ||| Sbjct 42726 TC--TTGACGCCTGTATGTTTCCGAGGAAGAGCTTGGTCTGCAGTCCGACCTTGATCCT- 42782 Query 124656 TCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGAC 124712 ||| ||| || | || ||||| || |||||||| |||| || || || ||| Sbjct 42783 TCC--CAAGGCCCGAGTTATCTTCCGAGTCACAAAGTTCTCG---CCTCGGCGGGGTGAC 42837 Query 124713 TCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTT 124768 |||||||||||||| || ||| | || || ||| |||||| | || |||||||| Sbjct 42838 TCGTGGTTGAACAGGATCCCATTGCATGCGTACAGCCCGTATGCTTCTCGGTAGTT 42893 >seq19327 Length=193161 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 38388 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 38329 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 38328 TGAGCTACGAGAGC 38315 >seq18933 Length=161301 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 11722 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 11781 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 11782 TGAGCTATGAAAGCA 11796 >seq21172 Length=998197 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 14381 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 14440 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 14441 TGAGCTATGAAAGC 14454 >seq19392 Length=578342 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 238012 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 238071 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 238072 TGAGCTATGAAAGC 238085 >seq18930 Length=173694 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 86480 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 86421 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 86420 TGAGCTATGAAAGC 86407 >seq18451 Length=711246 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 105879 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 105938 Query 79684 TGAGCTACGAAAGCAAA 79700 ||||||| |||||| || Sbjct 105939 TGAGCTATGAAAGCTAA 105955 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 106222 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 106281 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 106282 TGAGCTATGAAAGC 106295 >seq18716 Length=1033913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 31874 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 31815 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 31814 TGAGCTACGAGAGCAA 31799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547069913848600