Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq17269 585 3e-162 seq20510 163 3e-35 >seq17269 Length=4150 Score = 585 bits (648), Expect = 3e-162 Identities = 702/954 (74%), Gaps = 0/954 (0%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTT 176206 ||||| |||| ||||||||||| | ||||| || | | || || | | || Sbjct 2776 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTT 2835 Query 176207 TTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAG 176266 |||| | ||||| ||||| || || || || ||||| || |||||||| ||||| || Sbjct 2836 TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 2895 Query 176267 CAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACG 176326 | |||||||| || || |||||||| || || ||||| || | | || | || | Sbjct 2896 CTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAG 2955 Query 176327 CAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 176386 | || || | || || ||||| ||||||||||| ||| | ||||| |||||||| |||| Sbjct 2956 CTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACA 3015 Query 176387 ATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGG 176446 |||| || || || |||| |||| | ||||| | | ||| | | ||| |||| Sbjct 3016 ATGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGG 3075 Query 176447 GACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACT 176506 | || | ||||||||||||| | | || || |||||||||||||| ||||||||| | Sbjct 3076 GTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 3135 Query 176507 CTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTT 176566 | || || || | || || | || |||||| | |||| ||| | ||||||||| || Sbjct 3136 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTT 3195 Query 176567 TCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAG 176626 | ||||||||||||||||| || || || ||||| |||||||||||| |||||||||| | Sbjct 3196 TTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGG 3255 Query 176627 CAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTG 176686 | |||||||||||||| ||||||||||| || ||| | || ||||| ||||| || || | Sbjct 3256 CTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCG 3315 Query 176687 GATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAA 176746 | || || || || |||||||| | || |||||| | | || || || | Sbjct 3316 GCTCCCTATTTAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCA 3375 Query 176747 CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACA 176806 | ||||| ||||| || | ||||||| |||||| ||||||||||| || ||||||| Sbjct 3376 CAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACA 3435 Query 176807 TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACT 176866 |||||||||| |||||||| ||||| || | |||||||| |||||| |||||| || | Sbjct 3436 TTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATT 3495 Query 176867 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAA 176926 | | | | || |||||| | || || | || || || | || ||||||||||| Sbjct 3496 CTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTT 3555 Query 176927 TGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG 176986 | ||| || | || ||||| |||||||| || |||||||| |||||||| || || | | Sbjct 3556 TAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTG 3615 Query 176987 ACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTA 177046 | | || || ||| ||| |||| ||||| |||||||||| |||||||||| Sbjct 3616 ATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTA 3675 Query 177047 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 ||||||||||||| || |||||||||||||||||||| || ||||| ||||||| Sbjct 3676 TGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTAGACCTAGCTGCTG 3729 >seq20510 Length=252746 Score = 163 bits (180), Expect = 3e-35 Identities = 150/190 (79%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 176911 ATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTC 176970 || ||||||||||| | ||| || | || ||||| |||||||| || |||||||| ||| Sbjct 30759 ATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTC 30700 Query 176971 AACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAAC 177030 ||||| || ||| | || | || || ||| ||| |||| ||||| ||||| Sbjct 30699 AACCAATCAGTCGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAAC 30640 Query 177031 CGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 177090 ||||| ||||||||||||||||||||||| || |||||||||||||||||||| || ||| Sbjct 30639 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTAGAC 30580 Query 177091 CTTGCTGCTG 177100 || ||||||| Sbjct 30579 CTAGCTGCTG 30570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603333289626240