Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq19402 96.9 3e-15 seq21007 91.5 1e-13 >seq19402 Length=197664 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 118489 TAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGA 118548 || ||||||||||| ||||| ||| || || |||||||| ||| || ||| Sbjct 22533 TACACATGAGCATCACCAATAACATGGATAAAATCACCAGGAACAAGATTGCACAAATGA 22592 Query 118549 GCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATG 118608 || | |||| | || | | | ||| || | ||||| || ||||| || |||||| Sbjct 22593 GCTAGCATGCACGTAAGAAGAGAATAGGAAGCAATGTTAAACGGCACACCAAGTCCCATG 22652 Query 118609 TCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACTT 118668 || ||||| | ||| |||| ||| || ||||||||||| | ||| ||||| ||||| Sbjct 22653 TCCGCTGAACGCTGATACATTTGACATGAGAGCTCCCCTTCTGCCACATAGAACTGTGCA 22712 Query 118669 ATGATGTGACATGGAGGCAGAACCATGGAACTCAGTTGGGCAGGATTCCAGGC 118721 | || || |||||||| || |||| | | || | | ||||||||| || Sbjct 22713 AACATATGGCATGGAGGAAGTGCCATCAACTTGAGATCAGAAGGATTCCAAGC 22765 >seq21007 Length=954693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| |||||||| || ||||| | ||| |||| ||| || || ||||| Sbjct 134443 TTAAACGGTACACCAAGACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCT 134384 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || ||||||||||||||||| | ||||| |||||||| || |||| Sbjct 134383 CCATTTGCAACATAAAACTGCGCAAACATGTGGCATGGAGGAAGTGCCAT 134334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414368916481348