Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq19979 84.2 2e-11 seq19364 82.4 5e-11 >seq19979 Length=600886 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || ||| | || ||||| || || |||| || || ||| || Sbjct 465337 ATGCAGATCTTCGTTAAGACTTTGACCGGGAAGACCATCACTCTTGAGGTGGAGAGCTCC 465396 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || ||| ||||| |||||||||||| |||| ||| | Sbjct 465397 GACACCATCGACAAC--GTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCGGACC 465454 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || || || || || | || || | |||| ||| ||||||||| Sbjct 465455 AGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGGCCGATTACA 465514 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || ||||| |||||| | ||||| || Sbjct 465515 ACATCCAGAAGGAGTCGACCCTTCACTTGGTCTTGCGTCTCCGTGGTGG 465563 >seq19364 Length=374643 Score = 82.4 bits (90), Expect = 5e-11 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||||||||||| || || || | || || |||||| || Sbjct 235843 ATGCAGATCTTTGTAAAGACTCTTACTGGCAAGCCGATGACTCTCGAGGTTGAAAGCTCC 235784 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| ||| |||| || | | | || | | || ||||| ||||| || | ||| Sbjct 235783 GACACTGTCGACAA-CGTTAAGGCTAAGATTCAG--GACAAGGAAGGGATTACTCCGGAT 235727 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| || | || |||||||| || || | || || | ||| | ||| | |||||| Sbjct 235726 CAGCAAAGGCTTATCTTTGCCGGTAAGCAGCTTGAAGATGGACGTACTTTGGCTGATTAC 235667 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTG 28008 | || ||||| || ||| | || |||||| |||||||| Sbjct 235666 AGTATTCAAAAGGAATCGACTCTCCACTTGGTTCTGCGTTTG 235625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355769773131939