Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq20422 105 6e-18 >seq20422 Length=233597 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | || |||||||| || ||||| ||| || || ||||| ||||| Sbjct 131141 CATGCCTCCACGCAGACGCAACACCAAGTGAAGCGTAGACTCCTTCTGAATATTGTAATC 131082 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||| | || || | || |||||||| || || || || || ||||||||||| || | Sbjct 131081 GGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGG 131022 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 || | | |||||||||| ||| || | || | ||| | | | || ||| | Sbjct 131021 AGGAATACCCTCTTTGTCCTGGATCTT-GGCTTTAACGTTGTCAATAGTGTCGGAGCTTT 130963 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| |||||| | ||||||||||| || || |||||||| ||||| Sbjct 130962 CAACCTCCAAAGTGATAGTCTTTCCCGTCAGGGTCTTGACAAAGATCTGCAT 130911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429433794246941