Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq18898 113 3e-20 seq21172 111 1e-19 seq19979 107 1e-18 seq19630 100 2e-16 seq20655 89.7 3e-13 seq19059 89.7 3e-13 >seq18898 Length=1351152 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| |||||||| || |||||||| ||||| | | Sbjct 749115 ATGCAGATTTTCGTCAAGACCCTCACCGGAAAAACCATTACTCTCGAGGTTGAGAGCTCT 749174 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| ||||| | |||||||| || Sbjct 749175 GACACAATTGACAACGTGAAGGCGAAGATTCAAGACAAGGAAGGGATCCCGCCAGACCAG 749234 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || || ||||| || || || | || ||| | | ||||||||| Sbjct 749235 CAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGGACTCTGGCTGATTACAAC 749294 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| || | ||||| ||| Sbjct 749295 ATCCAGAAGGAGTCGACTCTTCATTTGGTT 749324 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| ||||| || || || ||||||||||| || || | | Sbjct 748431 ATGCAAATATTCGTGAAAACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 748490 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| |||||| | || || || || Sbjct 748491 GACACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCA 748549 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || || || |||| | | ||| | | || ||||| Sbjct 748550 GCAGAGACTTATCTTCGCCGGGAAGCAGCTCGAGGACGGAAGGACTCTTGCTGACTACAA 748609 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 748610 CATCCAAAAGGAGTCGAC 748627 >seq21172 Length=998197 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||||||| |||| |||||||||||| | | ||||||||||| || ||||||||| Sbjct 271863 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGTAAGCAACTGGAA 271922 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | ||| || ||| ||||||||||| || |||||||| || | ||| | || || Sbjct 271923 GATGGACGAACACTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTCGTCTTG 271982 Query 23824 AGGTTGCGAGGAGG 23837 ||| | |||| || Sbjct 271983 AGGCTCAGAGGTGG 271996 >seq19979 Length=600886 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || | || || || || |||||||| || || || | | Sbjct 465337 ATGCAGATCTTCGTTAAGACTTTGACCGGGAAGACCATCACTCTTGAGGTGGAGAGCTCC 465396 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| |||||| |||||||||||| | || || || || Sbjct 465397 GACACCATCGACAACGTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCGGACCAG 465456 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || || | ||||| || | |||||||||| Sbjct 465457 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGGCCGATTACAAC 465516 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 465517 ATCCAGAAGGAGTCGAC 465533 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| ||| | |||||||| ||||||||||| |||||||| | Sbjct 465565 ATGCAGATTTTCGTTAAGACCTTGACGGGAAAGACGATCACTCTTGAAGTTGAGAGTTCT 465624 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| ||||| | || || || || Sbjct 465625 GACACCATTGATAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCGGACCAG 465684 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || || | ||||| | | || |||||| Sbjct 465685 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACACTGGCTGACTACAAC 465744 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || ||||| ||| | ||||| || || Sbjct 465745 ATCCAGAAGGAGTCTACACTTCATTTGGTGTT 465776 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| ||||| || ||||| || || || || | Sbjct 464653 ATGCAGATCTTCGTCAAGACACTCACCGGAAAGACTATCACCCTTGAGGTGGAAAGTTCT 464712 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || ||||| | || | | || || || || | || || ||||| Sbjct 464713 GACACAATCGACAACGTTAAAGCCAAGA-TCCAGGATAAGGAGGGCATTCCTCCGGATCA 464771 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || ||||||||| || ||||| | ||||||||| Sbjct 464772 GCAGAGGCTTATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACAA 464831 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || || || || | ||||| || ||||| | || || || Sbjct 464832 CATCCAGAAGGAATCTACTCTCCATTTGGTGCTAAGGCTCCGTGGTGG 464879 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || ||||| || || || || | | Sbjct 465793 ATGCAGATTTTCGTGAAGACCTTGACCGGTAAGACCATCACACTGGAGGTGGAGAGCTCC 465852 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| ||||| | || ||||| || Sbjct 465853 GACACCATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAG 465912 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || || | ||||| |||| ||| |||||| Sbjct 465913 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTAGCCGACTACAAC 465972 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 465973 ATCCAGAAGGAGTCGAC 465989 >seq19630 Length=159711 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| || || || || ||||| ||||| || || ||| Sbjct 121735 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 121676 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||||||||| | || || || Sbjct 121675 TCTGACACCATCGACAATGTCAAGGCCAAGA-TCCAAGACAAAGAAGGAATCCCTCCGGA 121617 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | | || || ||||| ||||| || ||||| | || ||||| | || || Sbjct 121616 TCAGCAGAGACTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGTACTTTGGCTGACTA 121557 Query 23787 CAACATACAAAAAG 23800 |||||| || |||| Sbjct 121556 CAACATCCAGAAAG 121543 >seq20655 Length=190867 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||||||||| | || || || || |||||||| || || || | | Sbjct 173987 ATGCAGATCTTCGTTAAAACATTGACAGGGAAGACCATCACTCTAGAGGTGGAGAGCTCC 173928 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| || || || || |||||| | || || || || Sbjct 173927 GACACCATTGATAACGTGAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCGGACCAG 173868 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || ||||| | || || || | ||| |||||| Sbjct 173867 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGTCGTACCTTGGCCGACTACAAC 173808 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 173807 ATCCAGAAGGAGTCGAC 173791 >seq19059 Length=274371 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||||||||| | || || || || |||||||| || || || | | Sbjct 257491 ATGCAGATCTTCGTTAAAACATTGACAGGGAAGACCATCACTCTAGAGGTGGAGAGCTCC 257432 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| || || || || |||||| | || || || || Sbjct 257431 GACACCATTGATAACGTGAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCGGACCAG 257372 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || ||||| | || || || | ||| |||||| Sbjct 257371 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGTCGTACCTTGGCCGACTACAAC 257312 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 257311 ATCCAGAAGGAGTCGAC 257295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337921620009356