Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq20199 163 4e-35 seq19642 114 2e-20 >seq20199 Length=1256174 Score = 163 bits (180), Expect = 4e-35 Identities = 399/595 (67%), Gaps = 10/595 (2%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || ||||| || || | |||||| |||| || || ||||| || || || | | Sbjct 343416 CAGGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAAGTCAAC 343475 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAA 46748 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 343476 CCAGGCATGAGACCTCGTTTCTTGAGCCAGAAGATTGA-GCAGAAGCTGCCTGAGAAGAA 343534 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGA 46806 || ||||| || ||||| ||||| | |||||| || || ||| ||| || Sbjct 343535 GATACCTTCGACGCAAGCGAAGGCGACGATTCTCTCAGCGAAAGTCTGAGATCC--ATCG 343592 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 |||||| | ||||| | || ||||| || ||||| |||||||| || || | Sbjct 343593 ATCCACTTCATGGCCCATTGGGCTTTTTTAGCGACGCAAGGGATTGTTTCGATGGCCCGA 343652 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 |||||| || | | || | | ||||| | || || || | | ||||| ||||| Sbjct 343653 AAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGGAGGAGACTGTACATC 343712 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || || || || ||||| || ||||| || ||||| ||| | ||||||| | Sbjct 343713 TCCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCTTCAGAGACT 343772 Query 46987 TGTACCTCTGTACAA-AATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 || || || | ||| || ||| || | |||||| || ||||| ||| || || Sbjct 343773 TGCACATCGG-ACATGAACCGTGAAGCGAGATTCTCGAGAACGATTCCGTCAGATGCGGC 343831 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC-AGTTTATTCCAGT 47104 || || || | || ||||| || || | | || || || || || || | ||||| Sbjct 343832 GAAGAAAGCGAGGACGTGTTTGATGAAGTGCCTCTC-TCCGTCGTTGAGATTCTCCCAGT 343890 Query 47105 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTT 47164 | |||| |||| ||| ||||||||||| |||||||| || || || ||||| | Sbjct 343891 CGCGACCGTCTTGAGATAGATCGACTTCTTCAGCCGTCCAGAAAGATGCTTCGGCTTTCT 343950 Query 47165 TATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219 | ||||| | ||| || | | | || ||||| || || ||| ||||| | ||| Sbjct 343951 TGTACATCTCCCAGATCTGAGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 344005 >seq19642 Length=374925 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | || |||| | || ||| |||| ||| || Sbjct 361683 CCTCCTTGATCGACATAACGAGCAGTATCGTTGAAAACACGCAGCATAGGAACAATACCA 361742 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || |||||||| ||| ||| ||||||||| |||||| |||||| || || Sbjct 361743 TTAGACGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATATTATGAACTGAG 361802 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| || | |||||| ||| | ||| ||||| ||| Sbjct 361803 ACACCAATACCTCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 361862 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || || || |||||||| ||||| | ||||||||||| Sbjct 361863 CCTTCAATGCTATCATCTTTCATGCAGATCAGAAAACAGCT 361903 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||||| ||||| | |||||| |||||||||||||||||| | | ||| | | || Sbjct 362031 AGTTCCTGCGTTAAAGAGTGTAGGGGATGCATGAGTGAACCATCTCTGAGACATCAAATG 362090 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| || | || | | || ||||| | ||| || || || ||||| || | ||| | Sbjct 362091 GTAAGTCTTGATTGCAGAATCAATATCGTCCTTG-TGGATGCCAACAGCAACCCTCATAA 362149 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || ||||| | ||| ||| || || | |||||| | ||| ||| | || | Sbjct 362150 GCATGTGTTGAGGCCTTTCAACAACTTTCCCATGAACTTTCAAGAGGTAAGATCTCTCAA 362209 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||| ||||| || | ||| ||| || | ||||| ||||| Sbjct 362210 GTGTTTTAAACCCAAAGTAATCATATTCAAAATCACGGTCGTAGATAAT 362258 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| | || |||| ||||||||| ||||||| ||| ||||||| Sbjct 361231 CTCTCTTTCATACTTAGTGTATAGTTTCTCAAATTCAGCTCCCCAGCAATCTGCCAAACC 361290 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| |||||| ||||| | || |||||||| ||||| || |||| | ||| || Sbjct 361291 CGGAGCTTCATTAGGACAAAACAGTGACCACTGCCCATCACTCTGGACCCTCTCCATGAA 361350 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||| || | |||||||||| ||| | |||| | || ||||||| Sbjct 361351 AAGATCTGGAACCCATAGAGCATAAAACAAGTCTCTAGCCCTGTGTTCTTC 361401 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 75736 CAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 75795 ||| ||||| || |||| ||||| ||||||||| || | | |||||||||| || | Sbjct 359837 CAAGACTCTGCGGCTGTAGATATTTGAGGTATATGGCTCGAAACATTCATTGTTCCCGAG 359896 Query 75796 AATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 75855 || ||| ||||||||||| ||||||||||| |||| | | ||| || | |||| Sbjct 359897 TATCTGACTGGTTGAAGCAGTTGGCATAGGTGCTACCAGAAGAGAATTCCTCACTCCATT 359956 Query 75856 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCA 75915 || ||| | | | | || | ||| |||||| | | |||||| |||| ||| Sbjct 359957 CTTTGAGATCTCACCCCTAAGGGAAGCCCAGTCCCAACGGTTTGATGGAGTTACATTCCA 360016 Query 75916 GAGATCGTATTGTAGAATTCC 75936 | ||| ||| |||||||| Sbjct 360017 CATATCAGGTTGAAGAATTCC 360037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712744073250240