Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq17269 688 0.0 seq20510 506 3e-138 seq19338 345 5e-90 seq21340 87.8 2e-12 >seq17269 Length=4150 Score = 688 bits (762), Expect = 0.0 Identities = 751/995 (75%), Gaps = 2/995 (0%) Strand=Plus/Plus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | ||||| || |||||| | || || || || | || |||||||| | Sbjct 2741 CTTCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 2800 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTCGCTGCTCC 183314 |||||| || || | ||| | ||||| | || || | || ||| | |||||||| Sbjct 2801 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 2860 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 ||| || || || || || || || ||||| ||| |||| || || | || |||||||| Sbjct 2861 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 2920 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434 || || || ||||| || ||||| |||| || ||||| | || || || || || Sbjct 2921 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 2980 Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494 ||||||||| ||||| | ||||| ||||| || || ||||||||||| |||| | || Sbjct 2981 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGT 3040 Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554 | ||||| | |||| || || || |||||||||||||||||| | || ||| Sbjct 3041 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 3100 Query 183555 TCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGC 183614 ||| ||||||||||||||||| |||||| ||| || |||||||| ||||| || || Sbjct 3101 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 3160 Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 ||| ||| || |||| || | |||||||| |||| |||||||||||| || || || Sbjct 3161 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 3220 Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734 | ||| || || |||| |||| |||| ||||| || ||||||||||| || |||||||| Sbjct 3221 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 3280 Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794 || |||||| | ||||| |||||||| ||||| || || || || ||||| |||||||| Sbjct 3281 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACGG 3340 Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATG 183853 ||| |||| |||| || | | | || | |||||||| || ||| || || | | Sbjct 3341 TTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 3399 Query 183854 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTG 183913 |||||| ||||||||||||||||| || ||||||||||| |||||||| || || |||| Sbjct 3400 GTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 3459 Query 183914 GTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTG 183973 | || |||||||||| |||||| || ||||||||||||||| | || |||||| | | Sbjct 3460 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 3519 Query 183974 CTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTA 184033 | |||||||| || || || || |||||||||||| | ||| |||| |||||||| || | Sbjct 3520 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 3579 Query 184034 ACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACA 184093 |||| |||||||| || |||||||| || | ||||| ||||||| ||||| | || | Sbjct 3580 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 3639 Query 184094 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATG 184153 | ||||| || || | ||||||||| ||||| |||||||| ||||| || ||||||| Sbjct 3640 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 3699 Query 184154 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 184188 ||||||||||||| || ||||| ||||||| |||| Sbjct 3700 CTCACAACTTCCCGCTAGACCTAGCTGCTGTTGAG 3734 >seq20510 Length=252746 Score = 506 bits (560), Expect = 3e-138 Identities = 716/1004 (71%), Gaps = 2/1004 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | |||||||| || ||||| || |||||||| || | || | Sbjct 62287 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 62346 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | || | || || ||| | || || ||||| ||||| || | Sbjct 62347 TTCCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 62406 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 ||||||| || || ||||| ||| || | || ||| |||||| | || || |||| Sbjct 62407 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 62466 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || ||||||||| | | | | |||||| | | |||| ||||||||||| | | Sbjct 62467 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 62526 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 |||||||| | | || |||| ||| | || || || ||| |||||| || ||||||| Sbjct 62527 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 62586 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGT 186329 | || || || | |||||||| ||| | || || |||||| | ||| ||| | | Sbjct 62587 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 62646 Query 186330 ATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTC 186389 | || || || ||||| || || || |||||||| || ||||| |||||| ||| || Sbjct 62647 -TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTT 62705 Query 186390 CTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCA 186449 || || || || || || || || |||||||| || || ||||| || || || Sbjct 62706 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 62765 Query 186450 ATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 186509 || ||| ||||| | | || |||||||||| || || ||||| ||||| ||||| || Sbjct 62766 ATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTCAT 62825 Query 186510 ATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACT 186569 |||||||| || || ||| | || || | |||||||| | || || ||||||| |||| Sbjct 62826 ATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACT 62885 Query 186570 GTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACG 186629 |||||||||||| | | ||||||||| || ||||| |||||| || || | | Sbjct 62886 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 62945 Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689 || |||| |||||||| ||||| |||||||| || ||| | || |||||||| ||||| Sbjct 62946 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 63005 Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATG 186749 || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | Sbjct 63006 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACT 63065 Query 186750 GGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGAC 186809 ||| | |||| | | |||| | | ||||| ||| | ||||| ||||| |||||| Sbjct 63066 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 63125 Query 186810 TTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAG 186869 || || ||||| | | ||||| || ||||| || || ||||| |||||||| || Sbjct 63126 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 63185 Query 186870 AATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAA 186929 ||||| || || || |||||| | || || |||||||| | ||||| || |||||| Sbjct 63186 AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 63245 Query 186930 AACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 ||| || |||| ||||| || || | ||| | || |||||||| Sbjct 63246 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 63289 Score = 187 bits (206), Expect = 3e-42 Identities = 160/198 (81%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 183991 GGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAAC 184050 || || |||||||||||| | ||| |||| |||||||| || ||||| |||||||| || Sbjct 30762 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAAT 30703 Query 184051 TTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTC 184110 |||||||| || || ||||| ||||||| ||||| | || || ||||| || || | Sbjct 30702 TTCAACCAATCAGTCGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATT 30643 Query 184111 AACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTC 184170 ||||||||| ||||| |||||||| ||||| || |||||||||||||||||||| || Sbjct 30642 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTA 30583 Query 184171 GACCTTGCTGCTGCTGAG 184188 ||||| ||||||| |||| Sbjct 30582 GACCTAGCTGCTGTTGAG 30565 >seq19338 Length=76300 Score = 345 bits (382), Expect = 5e-90 Identities = 590/852 (69%), Gaps = 3/852 (0%) Strand=Plus/Plus Query 186123 GAGGGTGCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCT 186182 || ||| | |||||| | || || ||||| | ||||||||| | | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 186183 CTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGG 186242 | | |||| ||||||||||| | ||||||||| | | || |||| ||| | || Sbjct 38377 TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGC 38436 Query 186243 GGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGG-TTTCATGCTGCG 186301 || | || ||| ||| || ||||||| || || || | ||||| ||| ||| | || Sbjct 38437 GGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACG 38496 Query 186302 ACAGTTTGAAATCAGTCGTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGG 186361 || |||||| | ||| ||| | || || || ||||| || || || ||||| Sbjct 38497 TCAATTTGAACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGG 38556 Query 186362 TCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTT 186421 ||| || ||||| |||||| | | || || || || || || || || || ||||| Sbjct 38557 TCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGTT 38616 Query 186422 CTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATT 186481 ||| || || ||||| || || || | ||| ||||| | | || ||||||| || Sbjct 38617 CTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCAAGGGTT 38676 Query 186482 CCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGC 186541 || || ||||| ||||| ||||| || |||||||| || || ||| | || | | || Sbjct 38677 TCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGCGGC 38736 Query 186542 TCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACA 186601 |||||| | || || ||||||| ||||||| |||||||| | | | ||||||| || Sbjct 38737 TCTGCTATGCGCTATTCATGGTGCTACTGTA-AAAATACTTTATTTAAAGATGGTGATGG 38795 Query 186602 AGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCAC 186661 ||||| |||||| | || | | || |||| ||||||||| ||||| |||||||| Sbjct 38796 TGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGGTCAC 38855 Query 186662 TGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCA 186721 || ||| || |||||||| ||||| || ||| ||| ||||||| ||||| || Sbjct 38856 CGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGTAACA 38915 Query 186722 TTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGG 186781 || ||| ||| | ||||| || || ||| | | || | | |||| | | || Sbjct 38916 TTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAGTCGG 38975 Query 186782 TCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGA 186841 ||| ||| | ||||| | | | |||||||| || ||||| | | ||||| || || Sbjct 38976 TCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGGAAGA 39035 Query 186842 TCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTG 186901 ||| || || ||||| |||||||| || ||||| || || || |||||| | || || || Sbjct 39036 TCCGGAATTTGAGACTTTCTATACTAA-AATATTCTTTTAAACGAAGGTATTCGCGCTTG 39094 Query 186902 GATGGCACCAGTGGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAG 186961 ||| || | ||||| || ||||||||| || |||| ||||| || || | ||| | Sbjct 39095 GATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACG 39154 Query 186962 AGGCAACGCTCT 186973 | |||||||| Sbjct 39155 TGAAAACGCTCT 39166 >seq21340 Length=206869 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 170991 GAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGT 171050 || || || || || | ||||| ||||||||||| ||| |||| ||| || || || Sbjct 41086 GACGACCAGTACATATTAGATGCAGCTGAAGAAGCTGGAGTTGACTTGCCTTACTCTTGC 41027 Query 171051 CGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCC 171110 | |||||||| ||||| || |||||||| || ||||||| ||| || || || || Sbjct 41026 AGAGCTGGTGCGTGTTCCACTTGTGCTGGTAAGATTGAGAAAGGTGAAGTGGACCAGTCT 40967 Query 171111 GATCAATCTTTCCTTGATGATGATCA 171136 ||| || || ||||| |||||||| Sbjct 40966 GATGGTTCGTTTCTTGAGGATGATCA 40941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621904330530840