Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq17269 657 0.0 seq20510 551 7e-152 seq19338 360 2e-94 seq20877 82.4 9e-11 seq19441 82.4 9e-11 >seq17269 Length=4150 Score = 657 bits (728), Expect = 0.0 Identities = 743/993 (75%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||||||||| |||| ||| | |||||||| || | || ||||| ||||| || Sbjct 2742 TTCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 2801 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGTTTCATCGTCGCTTTCGTCGCTGCTCCT 177717 ||||||||||| | | | || || | ||| || |||| ||| | ||||||||| Sbjct 2802 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 2861 Query 177718 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAAC 177777 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 2862 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 2921 Query 177778 ATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATC 177837 || ||||| ||||| || ||||| ||||| ||||||||| | || || || || ||| Sbjct 2922 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 2981 Query 177838 TGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATC 177897 |||||||| || || | ||||| ||||| |||||||||||||||| |||| || | Sbjct 2982 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGTT 3041 Query 177898 TTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCGC 177957 | ||||| | | ||| | | || ||||||||||||||||||||| || ||| Sbjct 3042 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3101 Query 177958 CTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCT 178017 || ||||||||||| ||||| ||| ||||| || ||||| || || || || ||||| Sbjct 3102 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 3161 Query 178018 GTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATC 178077 || ||| | | || || | |||||||| ||| ||||| | |||||| || || ||| Sbjct 3162 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 3221 Query 178078 AGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 178137 ||| || ||||||| ||| |||| ||||| || ||||||||||| || |||||||| Sbjct 3222 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 3281 Query 178138 TTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGT 178197 || |||||||| || || |||||||| || || || || || || ||||| ||||||||| Sbjct 3282 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACGGT 3341 Query 178198 TCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATGG 178256 || |||| |||| || | | | || | |||||||| || || ||| | || | || Sbjct 3342 TCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 3400 Query 178257 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGG 178316 ||||| ||||||||||||||||| || |||||||| || |||||||| ||||| || || Sbjct 3401 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 3460 Query 178317 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 178376 || ||||||||||||| || |||||||| || ||||| | || |||||| | || Sbjct 3461 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 3520 Query 178377 AGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAA 178436 || ||||| || || ||||| ||||| |||||| | ||| |||| || ||||| ||||| Sbjct 3521 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 3580 Query 178437 CCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACAC 178496 ||| || |||||||| |||||||| || | | |||||||| || || | || || Sbjct 3581 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 3640 Query 178497 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGC 178556 ||||| || || | ||||||||| |||||||||||||| ||||| || |||||||| Sbjct 3641 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 3700 Query 178557 TCACAACTTCCCTCTTGACCTCGCTGCTGCTGA 178589 |||||||||||| || ||||| ||||||| ||| Sbjct 3701 TCACAACTTCCCGCTAGACCTAGCTGCTGTTGA 3733 >seq20510 Length=252746 Score = 551 bits (610), Expect = 7e-152 Identities = 732/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898 |||||| | | ||||||||| | | | || || ||||||||||| |||||||| ||| Sbjct 62277 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 62336 Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958 || | || || || ||| || | || |||| |||||| |||| || ||||| || Sbjct 62337 CTATTGCTCTTTCCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 62396 Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018 || || || ||||||||||| || | ||| ||| ||| | || || || ||||| | Sbjct 62397 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 62456 Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078 || ||||| || || ||||||||| | | | | ||||| | | | || |||||| Sbjct 62457 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 62516 Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138 || ||||| || |||||||| || ||| ||| | || || || ||| ||||||| Sbjct 62517 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 62576 Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG- 179197 || |||||||| || ||||| | |||||||| ||| | || || |||||| | || || Sbjct 62577 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 62636 Query 179198 TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257 ||| || | | || ||||| ||||||||||| || ||||||||||||||||| ||||| Sbjct 62637 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 62695 Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317 ||||| ||||| || ||||| || || || || |||||||||||||| ||||| Sbjct 62696 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 62755 Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377 || || || || || || ||| | ||||| | || || || || || ||||| | || Sbjct 62756 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAA 62815 Query 179378 CCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCA 179437 ||| || || |||||||| || || ||| | ||||||| || |||| || || ||||| Sbjct 62816 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 62875 Query 179438 TGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGC 179497 ||||||||| ||||| || || | |||||||| |||| ||||||||||| || Sbjct 62876 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 62935 Query 179498 ATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTC 179557 || | || || |||| || || || ||||| ||||| || || ||||| || ||||| Sbjct 62936 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 62995 Query 179558 TCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617 || |||||||| | || || |||||| |||||| |||||||||||||||| ||||| Sbjct 62996 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 63055 Query 179618 TCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAG 179677 || || | ||| | |||| | |||| | | ||||| || | ||||| | Sbjct 63056 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 63115 Query 179678 AGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTT 179737 || |||||||| ||||| || || ||| | || || || ||||| || || ||||| || Sbjct 63116 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 63175 Query 179738 CTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCA 179797 |||||| || || || || || || |||||| | || ||||||||||| | ||||| Sbjct 63176 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 63235 Query 179798 ACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || ||||||||| || |||| ||||| || || | ||| | || |||||||| Sbjct 63236 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 63289 Score = 170 bits (188), Expect = 2e-37 Identities = 156/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 178393 GGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAAC 178452 ||||| ||||| |||||| | ||| |||| || ||||| |||||||| || |||||||| Sbjct 30762 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAAT 30703 Query 178453 TTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTC 178512 |||||||| || || | |||||||| || || | || || ||||| || || | Sbjct 30702 TTCAACCAATCAGTCGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATT 30643 Query 178513 AACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTT 178572 ||||||||| |||||||||||||| ||||| || |||||||||||||||||||| || Sbjct 30642 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTA 30583 Query 178573 GACCTCGCTGCTGCTGA 178589 ||||| ||||||| ||| Sbjct 30582 GACCTAGCTGCTGTTGA 30566 >seq19338 Length=76300 Score = 360 bits (398), Expect = 2e-94 Identities = 590/844 (70%), Gaps = 5/844 (1%) Strand=Plus/Plus Query 179010 AATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTT 179069 ||||| | |||||||| || | ||||||||| | | | | ||||| | | | Sbjct 38326 AATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCTTTGTTGTTA 38385 Query 179070 CTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGG 179129 || |||||||| ||||| || |||||||| || ||| ||| | || || | || Sbjct 38386 CTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTATGTGC 38445 Query 179130 CCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTC-ATGCTTCGGCAGTTTGA 179188 || ||| || |||||||||| ||||| | |||||||| ||| | || || ||||| Sbjct 38446 GATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACGTCAATTTGA 38505 Query 179189 AATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTG 179247 | | || || || || | | || ||||| ||||||||||| || ||||||||||||| Sbjct 38506 ACTTGCTCGATCCGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTG 38564 Query 179248 CTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGC 179307 |||| ||||| ||| | ||||| |||||||| || || || || ||||||||||||| Sbjct 38565 CTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 38624 Query 179308 CGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACT 179367 | ||||| || || || | || || ||| | ||||| | || || || || || | Sbjct 38625 CTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 38684 Query 179368 GGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTT 179427 |||| | ||||| || || |||||||| || || ||| | |||| || || |||| | Sbjct 38685 GGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGCGGCTCTGCTAT 38744 Query 179428 GTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATA 179487 | || |||||||||||||| ||| | || || | ||| |||| |||| |||||| Sbjct 38745 GCGCTATTCATGGTGCTACTGTA-AAAATACTTTATTTAAAGATGGTGATGGTGCAAATA 38803 Query 179488 CATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACC 179547 ||||| | || | || || |||| ||| || || ||||| ||||| || || |||| Sbjct 38804 CATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGGTCACCGCTAACC 38863 Query 179548 GTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTA 179607 || ||||| || |||||||| || || ||||||| ||||| ||||| ||||| Sbjct 38864 ACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGTAACATTCCTTTA 38923 Query 179608 TGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCAC 179667 |||| ||||| || || ||| | | || | |||| | | ||||| || Sbjct 38924 TGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTT 38983 Query 179668 TTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGT 179727 | ||||| | |||||||| ||||| || || || | || || || ||||| || | Sbjct 38984 TGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGGAAGATCCGGAAT 39043 Query 179728 TCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCAC 179787 | ||||| |||||||| || || || || || || |||||| | || |||||||| || Sbjct 39044 TTGAGACTTTCTATACTAA-AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATTGCGG 39102 Query 179788 CAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACG 179847 | ||||| || ||||||||| || |||| ||||| || || | ||| | | |||| Sbjct 39103 CTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGAAAACG 39162 Query 179848 CTCT 179851 |||| Sbjct 39163 CTCT 39166 >seq20877 Length=376463 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211 ||||||| | ||||| || | || || |||||||||||||| ||| | || | Sbjct 300504 TTGAGTGCGACGACGACGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGATTTGC 300445 Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271 ||||| ||||| || ||| | || ||||| ||||| || ||| | | | || | | Sbjct 300444 CTTACTCTTGCCGTGCCGGTTCTTGCTCGAGCTGTGCCGGTAAAGTTGTTGCTGGATCTG 300385 Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331 | || || || || ||||| |||||||||||||| | || ||| || |||| | Sbjct 300384 TTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGGTGAAGGGTTTGTTCTCA 300325 Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 |||||| | || ||||| ||| | |||||||| | |||||||| || Sbjct 300324 CTTGTGCCGCTTACCCTACCTCTGATGTTACCATTGAGACCCACAAAGAAGAAGA 300270 >seq19441 Length=80586 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 179225 AATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGG 179284 |||||| || ||||||| ||||||||| ||||| ||||| ||||| || ||||| || || Sbjct 18200 AATCGCATTCTCTGGTCTAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGG 18259 Query 179285 ACAGTCCTCGTGGTTCTTTGCGCCGTCG-TTTGGAGTTGCAGCGATTTTCCGCTTCCTAC 179343 || || |||||||||||| ||| | ||||| || || | || || || || | | Sbjct 18260 TCAATCTGGTTGGTTCTTTGCG-CGTAGTTTTGGTGTAGCGACTATATTTCGTATCATCC 18318 Query 179344 TCTTCCTACAGGGCTTCCACAA 179365 |||| | || || || || || Sbjct 18319 TCTTTTTCCAAGGGTTTCATAA 18340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596148008339120