Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq83 603 1e-167 seq309 592 2e-164 seq579 82.4 1e-10 >seq83 Length=41462 Score = 603 bits (668), Expect = 1e-167 Identities = 713/958 (74%), Gaps = 8/958 (1%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | || ||||| || ||||| || || | || |||||||| || Sbjct 3500 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3559 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCAC 135491 ||||| ||||| ||| | | | || || |||| |||||| |||| ||||| ||||| | Sbjct 3560 ATGATCCCTAC-CTTATTGACGGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 3617 Query 135492 CTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATA 135551 |||| || || ||||| || || || ||||||||| | || |||||| | |||||||| | Sbjct 3618 CTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACA 3677 Query 135552 ACATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCC 135609 | || || || ||||| |||| ||| || ||| || || || | || || || || Sbjct 3678 ATATTATTTCCGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTACATTTTTACCC 3735 Query 135610 CATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGT 135669 ||||||||||| || || ||||||| ||| |||| || |||||||||||| ||||| | Sbjct 3736 AATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAAT 3795 Query 135670 GGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTA 135729 || | |||||| | | || || | |||||||||||| |||||||| || | Sbjct 3796 TGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTT 3855 Query 135730 CCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTAC 135789 ||| ||||||||||| ||||||||| ||| || || ||||| |||||||| |||||||| Sbjct 3856 CCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 3915 Query 135790 TGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGG 135849 || |||||| || ||||||| | || ||||| ||| |||||||||||| || || Sbjct 3916 CGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 3975 Query 135850 CATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCA 135909 || ||||| ||||| || | |||| |||| |||||||| || |||||||| || ||||| Sbjct 3976 AATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 4035 Query 135910 TCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCA 135969 || || |||||||| || || ||||| || ||||| || || || ||| ||||||||| Sbjct 4036 CCCATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 4095 Query 135970 TGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTA 136029 ||| || | || || |||||| | | | || || || || ||||| || | Sbjct 4096 TGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 4155 Query 136030 TGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTT 136089 ||||||| ||||||||||| ||||| ||||| || || || || ||||||||||| || Sbjct 4156 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTT 4215 Query 136090 CGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCT 136149 || || |||||||||||||||| |||||||||||||||||| ||||||| ||||| Sbjct 4216 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCT 4275 Query 136150 TGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTT 136209 |||||||||||||| || |||||||||||| | || | || | || ||||| || Sbjct 4276 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTT 4335 Query 136210 CAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAA 136269 |||||| ||||| ||||| |||||||| || | || | | ||||||||| | || Sbjct 4336 CAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAA 4395 Query 136270 CACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 ||| ||||| ||| | | || |||||| || |||||||| || ||||| || ||| Sbjct 4396 CACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 4453 >seq309 Length=37764 Score = 592 bits (656), Expect = 2e-164 Identities = 739/1008 (73%), Gaps = 8/1008 (1%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || || || || ||||| || ||||| || ||| | || | Sbjct 23128 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGTCTATTGCTCT 23187 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||| ||||| || | || || ||| | || || ||||| ||||| || | Sbjct 23188 TTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 23247 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054 |||| ||||| || ||||| | |||| | |||||| |||||| | || || || | Sbjct 23248 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAATTTCTTAACTGCCGCGG 23307 Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114 |||| ||||||||| || | | | ||||| | | |||| ||||| ||||| | | Sbjct 23308 TTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGGGCCTGAAGCAC 23367 Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174 |||||||| | || |||| ||| | ||||| || ||||||||||| || ||||| | Sbjct 23368 AAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGTTGCTCTCCATG 23427 Query 138175 GGGCCTTTAGTCTGATTGGATTC-ATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGG 138232 | || ||| | || || || || ||| | || || || ||| | |||| |||| | Sbjct 23428 GAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTCGATCTGTT--- 23484 Query 138233 CA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTG 138290 || | | || || || |||||||||||||||||||| || ||||| || || || Sbjct 23485 CAATTGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTA 23544 Query 138291 TTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCA 138350 || ||||| ||||| | ||||| || ||||||||||||| || |||||||| ||| Sbjct 23545 TTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCA 23604 Query 138351 GCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTT 138410 || || || |||||| | | || |||| || || ||||| |||||| | ||||||||| Sbjct 23605 GCTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAACCCCTTT 23664 Query 138411 CATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCT 138470 ||||||||||| || || ||| | | || | |||| |||| || || |||||||||||| Sbjct 23665 CATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTCATGGTGCT 23724 Query 138471 ACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAA 138530 || |||||||||||||| | |||||| || || ||||||| || || ||| | Sbjct 23725 ACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCCGTGCTTTTAAC 23784 Query 138531 CCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATC 138590 || ||||||| |||||||| ||||||||||| || |||||||| | ||||| |||||| Sbjct 23785 CCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATC 23844 Query 138591 TTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTC 138650 ||||| |||||||| ||||| |||||| | || ||||||||| | ||||| || || Sbjct 23845 TTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTA 23904 Query 138651 ATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTAT 138710 | ||| | |||| ||| | |||| | | ||||| ||||| |||||||| || ||| Sbjct 23905 ACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTCTGAACCTACGTGCCTAT 23964 Query 138711 GA-TTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACAC 138769 || || ||| || || |||||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 23965 GACTTNCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACAC 24024 Query 138770 CAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCA 138829 ||| || ||||| | || |||||| | || || |||||||| || ||||| ||||| Sbjct 24025 CAAAAATATTCTCTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCA 24084 Query 138830 CGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 |||||| || | || ||||| || || | ||| | || |||||||| Sbjct 24085 TGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 24132 >seq579 Length=13019 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/69 (87%), Gaps = 2/69 (3%) Strand=Plus/Plus Query 119469 GTCGCCAAGTGGTAAGGCAGCGGGTTTTGGTCCCGCCATTCGTGGGTTCGAATCCTAC-- 119526 || |||||||||||||||| |||||||||||||||| ||||| |||||||||||| | Sbjct 9781 GTGGCCAAGTGGTAAGGCAACGGGTTTTGGTCCCGCTATTCGGAGGTTCGAATCCTTCCG 9840 Query 119527 TCTCAGAAC 119535 || |||||| Sbjct 9841 TCCCAGAAC 9849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627961429884800