Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq83 554 1e-153 >seq83 Length=41462 Score = 554 bits (614), Expect = 1e-153 Identities = 722/988 (73%), Gaps = 8/988 (1%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 3500 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3559 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| | ||||| || || || || Sbjct 3560 ATGATCCCTACCTTATTGACGGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCT 3619 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || ||||| || ||||| || ||||| || ||||| || || || | |||||||||||| Sbjct 3620 CCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAAT 3679 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | |||| | || || ||||| | || ||||| || ||| Sbjct 3680 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATC 3739 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 ||||||| ||||| | | ||||| |||||||||||||| ||||| ||| |||| |||| Sbjct 3740 TGGGAAG-CGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 3798 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAAC-TATCTTACA 19647 | ||||||||| | || ||||| ||| ||| | ||||||| | || ||| | Sbjct 3799 TCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTT-CC 3857 Query 19648 GATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTG 19707 | | || ||| |||| ||||| || |||||| |||| || | |||| ||| | Sbjct 3858 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 3917 Query 19708 CTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGT 19766 | || ||||| | | |||||| | || ||||| |||||| ||||||||||||||| || Sbjct 3918 CAGT-TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 3976 Query 19767 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCAT 19826 |||||||||||||| || || ||| | |||||||| || || ||||| ||||||||||| Sbjct 3977 ATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 4036 Query 19827 CCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 19886 || || |||||| | || || ||||| |||||||| || || || ||| ||||||||| Sbjct 4037 CCATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 4096 Query 19887 GGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTAT 19946 || ||||| ||||| | |||| |||||| || || ||| ||| || | Sbjct 4097 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 4156 Query 19947 GGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 20006 || || | ||||| ||||| ||||| || |||||||| || || || || || || ||| Sbjct 4157 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 4216 Query 20007 GGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTT 20066 || ||||||| || ||||||||| |||||| || |||||||| ||||| ||||| || Sbjct 4217 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTA 4276 Query 20067 GCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTC 20126 ||| ||| || || || || || ||| ||||| | | || || |||||||||||||| Sbjct 4277 GCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTC 4336 Query 20127 AACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGA-TGTCAACGGAAAGATAATCCC 20185 ||||| |||||||| || || ||||| || |||||||| ||| | || |||| Sbjct 4337 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTC-AGGGTCGTGTAATTAA 4395 Query 20186 AACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAA 20245 || ||||||||| | | || | |||||||| || | ||||||||||| || || || Sbjct 4396 CACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 4455 Query 20246 TGCTCATAACTTCCCACTTGATTTAGCT 20273 ||||||||||||||| || || ||||| Sbjct 4456 TGCTCATAACTTCCCTCTAGACCTAGCT 4483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144440164340772