Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq83 524 9e-144 seq309 405 6e-108 >seq83 Length=41462 Score = 524 bits (580), Expect = 9e-144 Identities = 714/988 (72%), Gaps = 10/988 (1%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| || || | ||| |||| ||||||||||| || Sbjct 3500 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3559 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| | ||| | || || || || || ||| | || ||||| |||||||| Sbjct 3560 ATGATCCC-TACCTTATTGACGGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCC 3618 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844 |||||| || || || || || | ||||| ||| | || ||| | | || || ||||| Sbjct 3619 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAA 3678 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 || || || ||||| | |||| |||| || ||||| ||||| || || || || Sbjct 3679 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAAT 3738 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 ||||||||| || | | || || ||||| |||||||| |||||||| | || || | Sbjct 3739 CTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 3798 Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | | |||||| | |||| | || ||||||||| | ||||||| || | | | Sbjct 3799 TCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCG 3858 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084 || || ||| |||||||||| ||| ||||| ||||| ||||| | || || || Sbjct 3859 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 3918 Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144 ||| ||| | | || ||| ||||||| || || |||||||||||||| ||||| || Sbjct 3919 AGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 3978 Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204 ||| ||||| ||||| |||||| | || ||||| || || |||||||| || |||||||| Sbjct 3979 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 4038 Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 171264 || || ||| ||| || || ||| | ||||| || || |||||||| ||||| || Sbjct 4039 ATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 4098 Query 171265 TTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGG 171324 ||| | || || ||| | | ||||| || || || || || || | || | || Sbjct 4099 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 4158 Query 171325 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 171384 || | ||||| ||||| |||||||| ||||| || || || |||||||| || || || Sbjct 4159 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 4218 Query 171385 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 171444 |||| |||||||| ||||| ||||||||||||||||| |||||||||||||| || Sbjct 4219 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGC 4278 Query 171445 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 171504 || | |||||||| || | ||||| ||| || | ||||| | || ||||| ||||| Sbjct 4279 TGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAA 4338 Query 171505 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAAC-GGAAAGATTGTACC-A 171562 ||| || || ||||| ||||||||||| || || || || | || | |||| | Sbjct 4339 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA--CAGTCAGGGTCG--TGTAATTA 4394 Query 171563 ACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 171620 ||| |||| ||| | | ||| | || |||||||| |||||||||||||||||| | | Sbjct 4395 ACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 4454 Query 171621 ATGCACACAACTTCCCACTAGACCTAGC 171648 |||| || |||||||| ||||||||||| Sbjct 4455 ATGCTCATAACTTCCCTCTAGACCTAGC 4482 >seq309 Length=37764 Score = 405 bits (448), Expect = 6e-108 Identities = 715/1040 (69%), Gaps = 23/1040 (2%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | ||||| |||||| ||| || |||||||| || | || ||||| ||| Sbjct 23118 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGT 23177 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || |||||||| || | || | || ||||||||| ||| || || || Sbjct 23178 CTATTGCTCTTTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTT 23237 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || |||||||| || ||||| | || || ||| | || || || || ||| Sbjct 23238 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAATTTCTTA 23297 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 ||||| || || || || |||| | || | | | ||| ||||||| |||||||| Sbjct 23298 ACTGCCGCGGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGGG 23357 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 ||||| |||||||||||| || || |||| |||||| || || || |||| ||||| Sbjct 23358 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGTT 23417 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGG-TTTCATGCTTAGACAGTTTGAGATTGCAGG 172153 || | ||||||| ||||| || ||||| ||| ||| | | || || ||| |||| | Sbjct 23418 GCTCTCCATGGAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTCG 23477 Query 172154 ACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCAC 172213 | |||| | | ||||| || ||| | |||||||| | ||||| || || Sbjct 23478 ATCTGTTCAATTGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 23537 Query 172214 GAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGG 172273 | ||||| || |||||| |||||||| | |||||||||| |||||| ||||| Sbjct 23538 TTCTGTATTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGG 23597 Query 172274 TGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAA 172333 ||| ||||| || ||||| | || |||| | || || || || ||| || | || Sbjct 23598 TGTAGCAGCTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAA 23657 Query 172334 TCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACA 172393 || |||||||||||||| || || ||| || | || | || || ||||| ||||| || Sbjct 23658 CCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTCA 23717 Query 172394 TGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGAT 172453 |||||| || ||| | || || || | ||||| || ||| || | Sbjct 23718 TGGTGCTACCGTAGAAAATACTTTATTTGAAG------------ACGGTGATGG-----T 23760 Query 172454 TCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGAT 172513 ||| |||| ||| | || || | || || || | |||||||||||| ||| | Sbjct 23761 GCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGT 23816 Query 172514 TACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTT 172573 || |||||| | || ||||| || || ||||| | || ||||| || ||| | | || Sbjct 23817 CACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTT 23876 Query 172574 ACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 172633 ||| ||| ||||||| || ||||| || | ||| | |||| || | || | || Sbjct 23877 ACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGT 23936 Query 172634 AGGTCTTGCACTTAACCTCAGAGCATACGACTTT-GTATCTCAAGAGATAAGAGCAGCAG 172692 ||||| || || ||||| | || || ||||| || ||||| || || | ||||| | Sbjct 23937 CGGTCTAGCTCTGAACCTACGTGCCTATGACTTNCGTTTCTCAGGAAATTCGCGCAGCGG 23996 Query 172693 AAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAG 172752 |||| || || ||||| || |||||||| || || ||||| | || |||||||| | | Sbjct 23997 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGCG 24056 Query 172753 CATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGC 172812 | |||||| | || ||||| || ||||| ||| || | ||||| || || || | | Sbjct 24057 CTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 24116 Query 172813 CACGAGGCAACGCACTATAA 172832 |||| || ||||| || ||| Sbjct 24117 CACGTGGAAACGCTCTTTAA 24136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570262833562680