Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq83 636 2e-177 seq309 558 4e-154 >seq83 Length=41462 Score = 636 bits (704), Expect = 2e-177 Identities = 726/965 (75%), Gaps = 10/965 (1%) Strand=Plus/Plus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 ||||||||||| |||| |||||||| ||||||| || || | ||| | ||||| Sbjct 3527 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACGGCAACT 3586 Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 ||||| || || | || ||| | || || ||||| || || || ||||| || ||||| Sbjct 3587 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGA 3645 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--C 166257 || || |||| |||||| | || || ||||| || || || ||||| || | || | Sbjct 3646 ACCTGTTTCAGGGTCTCTACTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTAC 3705 Query 166258 TCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAA 166317 | || || || || ||| | || || || || ||||||||||| ||||| |||||||| Sbjct 3706 TTCTGCA--GCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAA 3763 Query 166318 TGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTAT 166377 ||| | || ||||||||||||| | || | || | |||||| | | ||| | | Sbjct 3764 TGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCT 3823 Query 166378 GCCTACATGGGTCGTGAATGGGAA-TTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTG 166436 |||||||||||||| ||||| || ||| ||| || |||||||| ||||||||| Sbjct 3824 TGTTACATGGGTCGTGAGTGGGAGCTTAGCTT-CCGTCTGGGTATGCGACCTTGGATTGC 3882 Query 166437 CGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGG 166496 || ||||| || || ||||||||||| || ||||||| ||| || |||| || |||| Sbjct 3883 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGG 3942 Query 166497 TCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCT 166556 |||||| ||| ||||| | ||||| || || ||| ||| || ||||| | |||| | Sbjct 3943 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGAT 4002 Query 166557 TGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGG 166616 ||| ||||| || |||||||||||||| |||||||| || || ||| | || || || || Sbjct 4003 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTGGCTGG 4062 Query 166617 TGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG- 166675 ||||||||| || || || ||| || ||||| || | || ||||| | | | | Sbjct 4063 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGA 4121 Query 166676 TCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAG 166735 || | || ||||| |||| ||| ||| || | ||||||| || |||||||| |||| Sbjct 4122 TCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAG 4181 Query 166736 AGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTT 166795 | || || || ||||| || ||||||||||| || || || ||||||||||||| ||| Sbjct 4182 AAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 4241 Query 166796 CCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCT 166855 |||||||||||||| ||| | ||||||||||| || || |||||||| || ||||||| Sbjct 4242 GTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCT 4301 Query 166856 GGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACC 166915 ||||||| ||| | ||| ||||||| ||||| |||||||| || |||||||| ||||||| Sbjct 4302 GGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 4361 Query 166916 AGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTG 166975 | || | | || ||||||||||||| | ||||||||||| ||| || ||||||||| Sbjct 4362 AATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACACTTGGGCTGATATCATCAACCGTG 4421 Query 166976 CTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTG 167035 || || ||||||||||| ||||| || ||||||||||| ||||||||||| || || | Sbjct 4422 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAG 4481 Query 167036 CTGCT 167040 ||||| Sbjct 4482 CTGCT 4486 >seq309 Length=37764 Score = 558 bits (618), Expect = 4e-154 Identities = 736/1016 (72%), Gaps = 4/1016 (0%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | ||||| || || ||||| |||||||| || Sbjct 23118 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGT 23177 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||| ||| | || | || || ||| | || || || || ||| Sbjct 23178 CTATTGCTCTTTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTT 23237 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGG-TGCTAATTTTCT 167478 || || ||||||||||| || ||||| | ||| | || || ||| ||||| | Sbjct 23238 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGC-AATTTCTT 23296 Query 167479 CACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 167538 || || || || || ||||||||| | | | | ||||| | | |||| ||||| Sbjct 23297 AACTGCCGCGGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGG 23356 Query 167539 TCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGT 167598 ||||| | || || ||||| | | ||||| || | ||||| || ||| ||||||| Sbjct 23357 GCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGT 23416 Query 167599 GGCGCTCCACGGAGCCTTTGCTCTCATAGGATTT-ATGCTTCGGCAATTTGAGATAAGTA 167657 || ||||| ||||| |||| || ||||| ||| ||| | || ||||| ||| | | Sbjct 23417 TGCTCTCCATGGAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTC 23476 Query 167658 GACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTG 167717 || || | | ||||| ||||| || || || |||||||| |||||||| |||| Sbjct 23477 GATCTGTTCAATTGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 23536 Query 167718 TGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTG 167777 | ||||| ||||| || ||||| || || ||||| |||||||||||||||| |||| Sbjct 23537 TTTCTGTATTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTG 23596 Query 167778 GTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCA 167837 |||| ||||| |||||| ||||| | ||||| | || || || ||||| ||||| | | Sbjct 23597 GTGTAGCAGCTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGA 23656 Query 167838 ACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCC 167897 |||| || ||||||||||||||||| ||| | | |||| ||| ||||| | || || | Sbjct 23657 ACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTC 23716 Query 167898 ATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAG 167957 |||||| ||| ||||| |||||| | | |||||| ||||| ||||| || ||| | Sbjct 23717 ATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCCGTG 23776 Query 167958 CATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGT 168017 | ||| | | ||||| | || ||||||||||| |||||||| |||||||| || |||| Sbjct 23777 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 23836 Query 168018 CTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCG 168077 | ||||| ||||| ||||||| |||||| |||||||| || ||||||||| | || | Sbjct 23837 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 23896 Query 168078 TTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTC 168137 | || || | || | |||| ||| || |||| | ||||||| || || || || | Sbjct 23897 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTCTGAACCTAC 23956 Query 168138 GTGCTTATGACTTT-GTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACT 168196 |||| |||||||| || ||||||||| || | ||||| || ||||| || ||||| ||| Sbjct 23957 GTGCCTATGACTTNCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACT 24016 Query 168197 TTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGAC 168256 ||||| || ||||| || ||| | || ||||| | || || |||||||| | ||| Sbjct 24017 TTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGAT 24076 Query 168257 CAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || ||||||||| || ||||||| || || || | ||| | || |||||||| Sbjct 24077 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 24132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567226065335200