Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq83 677 0.0 seq309 553 2e-152 >seq83 Length=41462 Score = 677 bits (750), Expect = 0.0 Identities = 748/990 (76%), Gaps = 6/990 (1%) Strand=Plus/Minus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||| ||||| Sbjct 4486 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 4427 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 ||||||||||| | || ||||| ||||| | |||||||| |||| |||| | Sbjct 4426 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTAC 4367 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 || |||||||| |||||||| || |||||||| ||||| ||||||| ||| | ||| || Sbjct 4366 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 4307 Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTT 7773 |||||||| || || || ||||| || || ||||||||||| | |||||| |||||||| Sbjct 4306 AAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTT 4247 Query 7774 GAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTA 7833 ||| ||| ||||||||||||| || ||||| || || ||||| || ||||| || || Sbjct 4246 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 4187 Query 7834 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTC 7893 || ||||| ||||||||||| | ||||| | || || ||| || |||||||| Sbjct 4186 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 4127 Query 7894 ACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAA 7953 | | || | ||| ||||| | ||||||||||| |||||||| || || || || || Sbjct 4126 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 4067 Query 7954 GACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 8013 |||||||| ||||| | |||||| || |||||||| |||||||||||||| || ||||| Sbjct 4066 TACACCAGCCACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 4007 Query 8014 GACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACC 8073 |||| |||| | ||||| ||||||||||| || ||||||||| | ||||| ||| || Sbjct 4006 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 3947 Query 8074 TTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGC 8133 |||||||| || |||| | ||| || || | || || ||||| ||||| || ||||| Sbjct 3946 TTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGC 3887 Query 8134 TACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 ||| ||||| || |||||||| |||||| | ||| |||||||||||||||||||| Sbjct 3886 AACAGCAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTA 3827 Query 8194 TGCATAGATA--CCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAG 8251 || || || || | | |||||| | | || |||| |||||||||||||||| Sbjct 3826 -ACA-AGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTAT 3769 Query 8252 AGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTA 8311 | ||| ||||||| || || ||||||||||| || || || || | ||| ||||| | Sbjct 3768 AACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCA 3709 Query 8312 GAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACG 8371 |||| ||||| || ||||| || || || ||||| || || | || || || | || Sbjct 3708 GAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAGAGACCCTGAAACA 3649 Query 8372 GGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACA 8430 |||||||| || || |||||||| || ||||||||||| | ||| || | || || ||| Sbjct 3648 GGTTCACGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA 3589 Query 8431 AATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACG 8490 | || || | | | ||||| ||||||| ||||| ||||| || | || ||||| Sbjct 3588 GA-AGTTGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACG 3530 Query 8491 ATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || | ||| |||| |||||||||||| Sbjct 3529 GTTTTCAGTGCTAGTTATCCAGTTACAGAA 3500 >seq309 Length=37764 Score = 553 bits (612), Expect = 2e-152 Identities = 735/1016 (72%), Gaps = 4/1016 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || ||||||||| || ||||| Sbjct 24132 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 24073 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| || || | |||||| || || || || || ||||| ||||| ||| Sbjct 24072 TGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGAAAGTC 24013 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAAC-AAAGTCATAAGCTCTAAG 6441 || || || ||||| |||||||| | || || || ||||| |||||||| || | || Sbjct 24012 TCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGNAAGTCATAGGCACGTAG 23953 Query 6442 GTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 ||| || || ||||| | | |||| | |||| | ||| | || || ||||| Sbjct 23952 GTTCAGAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAA 23893 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 | |||||||||||||| |||||| |||||| || || | |||||||| || ||||| Sbjct 23892 TAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCA 23833 Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTT 6621 || || ||||| |||||||| ||||| || || || |||| || || | ||| || Sbjct 23832 AAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACG 23773 Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAAT 6681 ||| ||||||| ||||| |||||||| |||||||| ||||| |||||||| ||||| Sbjct 23772 GAATGTATTTGCACCATCACCGTCTTCAAATAAAGTATTTTCTACGGTAGCACCATGAAT 23713 Query 6682 AGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAG 6741 || || ||||| || | || || | ||| || || |||||||||||||| ||||| | Sbjct 23712 GGCGCATAGCAAAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAAGGGGTTCAA 23653 Query 6742 CGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801 ||||| || || || || || | || || | ||| || ||||| ||||| |||||||| Sbjct 23652 GGTCCAATTATGAAACCCTTGAAAAAATAGGATGAATCGAAATATAGCTGCTACACCAAA 23593 Query 6802 CGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAA 6861 || ||||||||||||| ||||| || || ||||| || ||||| ||||| ||||| Sbjct 23592 ACTAGGTGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGAAATACAGAAACAAA 23533 Query 6862 GACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTG 6920 |||||||| |||||||| || ||||||||||| || || | | | || ||| || | Sbjct 23532 AACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCTCA-ATTGAACAGATCGAG 23474 Query 6921 CGATCTCAAACTGCCGAAGCATGAAA-CCTATAAGGGCAAAGGCTCCGTGGAGCGCCACA 6979 | | ||| || || || | ||| ||| ||||| ||| |||| ||||| ||||| || ||| Sbjct 23473 CAAGCTCGAATTGACGTAACATAAAANCCTATTAGGCCAAAAGCTCCATGGAGAGCAACA 23414 Query 6980 AAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCC 7039 |||| ||| || ||||| | ||| ||| || |||||||| || ||||| || ||| Sbjct 23413 AAAGTCCACAGACCCCCCAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGCCCC 23354 Query 7040 CATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGG 7099 ||||| | | || |||||| | | | | ||||||||| || || || ||||| | | Sbjct 23353 CATAGTAACAATAACGAATGTGCTAAACTATTAGCAGGAGTAGAAACCGCGGCAGTTAAG 23294 Query 7100 AAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAA 7159 ||||| || || || | ||| ||| || | || || || ||||| || || || Sbjct 23293 AAATTGCAGCCTTCCAAATAAGAACTGGCCAATCCATGGGTATACCATGAAGTTACAAAG 23234 Query 7160 GTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCT 7219 ||||| || |||| |||||| || | || | || ||| ||| || || | ||||| Sbjct 23233 GTTGTACCTGTGAACCAACCCCCTACAGCGAAATAGGCACAAGGAAAGAGCAATAGACCG 23174 Query 7220 GACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 ||||| || ||||||||||| | || | | | ||||||||| | | |||||| Sbjct 23173 GACCAGCCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 23118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622118291019280