Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22]
837 sequences; 9,013,692 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq83 500 1e-136
seq309 410 1e-109
>seq83
Length=41462
Score = 500 bits (554), Expect = 1e-136
Identities = 679/944 (72%), Gaps = 2/944 (0%)
Strand=Plus/Plus
Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500
|||| |||||||||||| | ||||| || |||| | || ||| | | ||| || ||
Sbjct 3540 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACGGCAACTTC-TGTATTTATT 3598
Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560
|||| |||||||| || ||||| || || || || || || | ||||| || | ||
Sbjct 3599 ATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGG 3658
Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620
||| | | || || ||||| || || || ||||| || |||| | || |||||
Sbjct 3659 TCTCTACTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATA 3718
Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680
|| |||| || ||||||||||||||||| ||| | |||||||||||||| || || |||
Sbjct 3719 GGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGT 3778
Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740
||||||||| | | | | | |||||| | |||| | | |||||||| |
Sbjct 3779 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGT 3838
Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800
||||||| || | | | | || ||||| |||||||| ||||||||| || ||
Sbjct 3839 GAGTGGGAGCTTAGCTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCT 3898
Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860
|| || | ||||| ||| || ||||| | |||||| | ||||| || || |||
Sbjct 3899 CCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCT 3958
Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920
||||||||||| ||||| ||||| ||||||||||| || ||| | || ||||| || |||
Sbjct 3959 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAG 4018
Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980
|| ||||| || ||||| || || |||||| ||| || || || | ||||| || ||
Sbjct 4019 CACAACATCCTTATGCACCCATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCC 4078
Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040
||||| || ||||||||||| | || ||||| | | ||||| ||||| |||||
Sbjct 4079 CTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 4138
Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100
| || || || | ||||| | ||||| ||||| |||||||| || || || |||
Sbjct 4139 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTA 4198
Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160
|| || || ||||| ||||| || | |||||||| |||||| ||||||||||| |
Sbjct 4199 GCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 4258
Query 170161 AGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 170220
|||||||||||||||| | || ||||| ||| || | ||||| ||| || | |||
Sbjct 4259 TCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGT 4318
Query 170221 ATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCT 170280
|| |||| ||||| |||||| | ||||||||||| || |||||||| || ||||| |
Sbjct 4319 ATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGT 4378
Query 170281 AACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAA 170340
| || | | || |||| |||| | | ||| | || ||| | |||||||||
Sbjct 4379 CAGGGTCGTGTAATTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAA 4438
Query 170341 GTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384
|||||||||||| | ||||| || |||||||| |||||||||||
Sbjct 4439 GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 4482
>seq309
Length=37764
Score = 410 bits (454), Expect = 1e-109
Identities = 715/1040 (69%), Gaps = 23/1040 (2%)
Strand=Plus/Plus
Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588
|||||| || | || ||||||||| ||| || ||||| || || |||| ||||| |||
Sbjct 23118 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGT 23177
Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648
|| || || | |||||||| || | | | || ||||||||| ||| || |||||
Sbjct 23178 CTATTGCTCTTTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTT 23237
Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708
|| || ||||||||||| ||||| | || || ||| | || || || || ||| ||
Sbjct 23238 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAATTTCTTA 23297
Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768
|| || || ||||| || |||| | | | ||| | |||| || |||||
Sbjct 23298 ACTGCCGCGGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGGG 23357
Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828
|||||||||||||| ||| |||||||| ||| | || ||| | |||| |||||
Sbjct 23358 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGTT 23417
Query 170829 GCATTACATGGAGTCTTTGGACTCATAGG-TTTCATGCTCAGACAATTTGAGATCGCAGG 170887
|| | ||||||| ||||| || ||||| ||| ||| | | ||||| ||| | || |
Sbjct 23418 GCTCTCCATGGAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTCG 23477
Query 170888 ACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCAC 170947
| ||| | |||||||| || ||| |||||||||||| | || || || ||
Sbjct 23478 ATCTGTTCAATTGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 23537
Query 170948 TAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGG 171007
| | |||||||| ||||||||||||||| |||||||||| ||||| || ||
Sbjct 23538 TTCTGTATTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGG 23597
Query 171008 TGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAA 171067
||| ||||| || ||||| | ||| |||| | ||||| || || || || |||||
Sbjct 23598 TGTAGCAGCTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAA 23657
Query 171068 TCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCA 171127
|| ||||| |||||||| ||||| || || | || | || || |||| ||||||||
Sbjct 23658 CCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTCA 23717
Query 171128 TGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAAT 171187
|||||| || || | || || || | ||||||| | | || ||
Sbjct 23718 TGGTGCTACCGTAGAAAATACTTTATTTGAAGAC------GGTGATGGTG---------- 23761
Query 171188 TCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGAT 171247
|||| ||||||||||| ||| | || || || | ||||||||||| ||| |
Sbjct 23762 -CAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGT 23816
Query 171248 TACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTT 171307
|| || ||| | || ||||| || || ||||| ||||||| || || ||| | | ||
Sbjct 23817 CACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTT 23876
Query 171308 ACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 171367
||| ||| ||||||| || || || || | ||| | |||| || | || | ||
Sbjct 23877 ACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGT 23936
Query 171368 AGGTCTAGCACTTAACCTCAGAGCATACGA-TTTTGTATCTCAAGAGATAAGAGCAGCAG 171426
|||||||| || ||||| | || || || || || ||||| || || | ||||| |
Sbjct 23937 CGGTCTAGCTCTGAACCTACGTGCCTATGACTTNCGTTTCTCAGGAAATTCGCGCAGCGG 23996
Query 171427 AAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAG 171486
|||| || || || |||||||||||||| || ||||| || | || |||||||| | |
Sbjct 23997 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGCG 24056
Query 171487 CATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTAC 171546
| |||||| | | || || || ||||| ||| | ||||||| || || || |||
Sbjct 24057 CTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 24116
Query 171547 CAAGAGGTAACGCACTTTAA 171566
|| | || ||||| ||||||
Sbjct 24117 CACGTGGAAACGCTCTTTAA 24136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579206739986080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |