Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq83 500 1e-136 seq309 410 1e-109 >seq83 Length=41462 Score = 500 bits (554), Expect = 1e-136 Identities = 679/944 (72%), Gaps = 2/944 (0%) Strand=Plus/Plus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 |||| |||||||||||| | ||||| || |||| | || ||| | | ||| || || Sbjct 3540 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACGGCAACTTC-TGTATTTATT 3598 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 |||| |||||||| || ||||| || || || || || || | ||||| || | || Sbjct 3599 ATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGG 3658 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 ||| | | || || ||||| || || || ||||| || |||| | || ||||| Sbjct 3659 TCTCTACTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATA 3718 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || |||| || ||||||||||||||||| ||| | |||||||||||||| || || ||| Sbjct 3719 GGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGT 3778 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| | | | | | |||||| | |||| | | |||||||| | Sbjct 3779 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGT 3838 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800 ||||||| || | | | | || ||||| |||||||| ||||||||| || || Sbjct 3839 GAGTGGGAGCTTAGCTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCT 3898 Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860 || || | ||||| ||| || ||||| | |||||| | ||||| || || ||| Sbjct 3899 CCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCT 3958 Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920 ||||||||||| ||||| ||||| ||||||||||| || ||| | || ||||| || ||| Sbjct 3959 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAG 4018 Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980 || ||||| || ||||| || || |||||| ||| || || || | ||||| || || Sbjct 4019 CACAACATCCTTATGCACCCATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCC 4078 Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040 ||||| || ||||||||||| | || ||||| | | ||||| ||||| ||||| Sbjct 4079 CTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 4138 Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100 | || || || | ||||| | ||||| ||||| |||||||| || || || ||| Sbjct 4139 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTA 4198 Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160 || || || ||||| ||||| || | |||||||| |||||| ||||||||||| | Sbjct 4199 GCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 4258 Query 170161 AGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 170220 |||||||||||||||| | || ||||| ||| || | ||||| ||| || | ||| Sbjct 4259 TCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGT 4318 Query 170221 ATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCT 170280 || |||| ||||| |||||| | ||||||||||| || |||||||| || ||||| | Sbjct 4319 ATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGT 4378 Query 170281 AACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAA 170340 | || | | || |||| |||| | | ||| | || ||| | ||||||||| Sbjct 4379 CAGGGTCGTGTAATTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAA 4438 Query 170341 GTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 |||||||||||| | ||||| || |||||||| ||||||||||| Sbjct 4439 GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 4482 >seq309 Length=37764 Score = 410 bits (454), Expect = 1e-109 Identities = 715/1040 (69%), Gaps = 23/1040 (2%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || ||||| || || |||| ||||| ||| Sbjct 23118 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGT 23177 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || ||||||||| ||| || ||||| Sbjct 23178 CTATTGCTCTTTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTT 23237 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | || || ||| | || || || || ||| || Sbjct 23238 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAATTTCTTA 23297 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || || ||||| || |||| | | | ||| | |||| || ||||| Sbjct 23298 ACTGCCGCGGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGGG 23357 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 |||||||||||||| ||| |||||||| ||| | || ||| | |||| ||||| Sbjct 23358 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGTT 23417 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGG-TTTCATGCTCAGACAATTTGAGATCGCAGG 170887 || | ||||||| ||||| || ||||| ||| ||| | | ||||| ||| | || | Sbjct 23418 GCTCTCCATGGAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTCG 23477 Query 170888 ACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCAC 170947 | ||| | |||||||| || ||| |||||||||||| | || || || || Sbjct 23478 ATCTGTTCAATTGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 23537 Query 170948 TAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGG 171007 | | |||||||| ||||||||||||||| |||||||||| ||||| || || Sbjct 23538 TTCTGTATTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGG 23597 Query 171008 TGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAA 171067 ||| ||||| || ||||| | ||| |||| | ||||| || || || || ||||| Sbjct 23598 TGTAGCAGCTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAA 23657 Query 171068 TCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCA 171127 || ||||| |||||||| ||||| || || | || | || || |||| |||||||| Sbjct 23658 CCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTCA 23717 Query 171128 TGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAAT 171187 |||||| || || | || || || | ||||||| | | || || Sbjct 23718 TGGTGCTACCGTAGAAAATACTTTATTTGAAGAC------GGTGATGGTG---------- 23761 Query 171188 TCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGAT 171247 |||| ||||||||||| ||| | || || || | ||||||||||| ||| | Sbjct 23762 -CAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGT 23816 Query 171248 TACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTT 171307 || || ||| | || ||||| || || ||||| ||||||| || || ||| | | || Sbjct 23817 CACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTT 23876 Query 171308 ACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 171367 ||| ||| ||||||| || || || || | ||| | |||| || | || | || Sbjct 23877 ACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGT 23936 Query 171368 AGGTCTAGCACTTAACCTCAGAGCATACGA-TTTTGTATCTCAAGAGATAAGAGCAGCAG 171426 |||||||| || ||||| | || || || || || ||||| || || | ||||| | Sbjct 23937 CGGTCTAGCTCTGAACCTACGTGCCTATGACTTNCGTTTCTCAGGAAATTCGCGCAGCGG 23996 Query 171427 AAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAG 171486 |||| || || || |||||||||||||| || ||||| || | || |||||||| | | Sbjct 23997 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGCG 24056 Query 171487 CATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTAC 171546 | |||||| | | || || || ||||| ||| | ||||||| || || || ||| Sbjct 24057 CTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 24116 Query 171547 CAAGAGGTAACGCACTTTAA 171566 || | || ||||| |||||| Sbjct 24117 CACGTGGAAACGCTCTTTAA 24136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579206739986080