Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq83 610 8e-170 seq309 524 9e-144 >seq83 Length=41462 Score = 610 bits (676), Expect = 8e-170 Identities = 733/990 (74%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 ||||| | ||| |||| ||| | ||||| || || | || ||||| || || || Sbjct 3500 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3559 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 167981 ||||| || || | ||| | |||||| ||||| || || | |||||| | |||||||| Sbjct 3560 ATGATCCCTACCTTATTGACGGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 3618 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 || || ||||| || || || |||||||| || | || || || | || || ||||| Sbjct 3619 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAA 3678 Query 168042 CATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCAT 168101 || || || ||||| || | ||| ||||| ||||| || | || || || || || Sbjct 3679 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAAT 3738 Query 168102 CTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGT 168161 ||||||||| ||||| | ||||| ||||| || ||||||||||||| ||||| | || Sbjct 3739 CTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 3798 Query 168162 CTTTCACTTCCTCATCGG--TATCTATGCATACATGGGACGTGAATGGGAACTTTCATAT 168219 | |||||| | | || || || || |||||||| ||||| ||||| ||| | Sbjct 3799 TCTACACTTCTTACTTGGCGTAGCT-TGT-TACATGGGTCGTGAGTGGGAGCTTAGCTTC 3856 Query 168220 CGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGT 168279 ||| | |||||||| || ||||| ||||||||| || || || || || || || | Sbjct 3857 CGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACC 3916 Query 168280 GCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGA 168339 ||||| ||| | | || || |||||||||| ||||| ||||||| ||||| || ||| Sbjct 3917 GCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 3976 Query 168340 ATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 168399 ||||| || || ||||| | |||| | || ||||| ||||||||||| || || ||||| Sbjct 3977 ATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 4036 Query 168400 CCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCAC 168459 || || || ||| | ||||| ||||| ||||| || ||| | || ||||||||||| Sbjct 4037 CCATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 4096 Query 168460 GGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTAC 168519 || ||||| |||||| | | | || || || || |||| ||||| || | Sbjct 4097 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 4156 Query 168520 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 168579 ||||||| ||||| ||||| |||||||| || || |||||||||||||||||||| || Sbjct 4157 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 4216 Query 168580 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 168639 || || |||||||||||||| ||| ||||||||||| || || || ||||||||||| Sbjct 4217 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTA 4276 Query 168640 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 168699 ||||| |||||||| || || |||||||| ||||| | || | ||| ||||| ||| Sbjct 4277 GCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTC 4336 Query 168700 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 168759 ||||| || |||||||| |||||||| || | |||| ||||||||||||| | ||| Sbjct 4337 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAAC 4396 Query 168760 ACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 168819 || ||||| ||| | | ||||| ||| || |||||||||||||||||||| ||||| Sbjct 4397 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 4456 Query 168820 GCACACAACTTCCCACTCGATCTTGCTGCT 168849 || || |||||||| || || || |||||| Sbjct 4457 GCTCATAACTTCCCTCTAGACCTAGCTGCT 4486 >seq309 Length=37764 Score = 524 bits (580), Expect = 9e-144 Identities = 729/1018 (72%), Gaps = 8/1018 (1%) Strand=Plus/Plus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | ||||||||| | | ||||| || || || | || ||||| ||| Sbjct 23118 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGT 23177 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | || |||| ||||||| | ||| | || || ||| |||| |||||| | ||| Sbjct 23178 CTATTGCTCTTTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTT 23237 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTT---ACTTAGAAGGCGCTAACTTC 169483 || ||||| ||||| ||||| ||| | || ||||| | || |||||| || ||| Sbjct 23238 GTAACTTCATGGTATACCCATGGATTGGC---CAGTTCTTATTTGGAAGGCTGCAATTTC 23294 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | ||||| || || ||| |||||| | | | | ||| || | | || |||||| Sbjct 23295 TTAACTGCCGCGGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGG 23354 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 || || ||||||||||| ||||| ||| |||||||||||||| ||||| |||| ||| Sbjct 23355 GGGCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTT 23414 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGG-TTTCATGCTTAGGCAGTTTGAATTGGC 169662 || || || ||||| || |||| | || || ||| ||| | | || || || | || Sbjct 23415 GTTGCTCTCCATGGAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGC 23474 Query 169663 ACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATT 169722 || | || | | ||||||||||| || |||||||||||||| |||||||| || Sbjct 23475 TCGATCTGTTCAATTGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTT 23534 Query 169723 TGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTT 169782 ||| ||| ||||| || || ||||| || ||||| ||||||||||| || || Sbjct 23535 TGTTTCTGTATTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTT 23594 Query 169783 TGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTT 169842 ||| ||| |||| || || | ||| | | || | ||||| || || || ||||| || Sbjct 23595 TGGTGTAGCAGCTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTT 23654 Query 169843 GAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTAT 169902 ||| || || || |||||||| || || || | ||||||| || ||||| | || || Sbjct 23655 GAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCAT 23714 Query 169903 CCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAA 169962 ||||||| ||| ||||| || || || | |||||||||||| |||||||| ||| Sbjct 23715 TCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCCG 23774 Query 169963 GGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 170022 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| || Sbjct 23775 TGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 23834 Query 170023 GTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTT 170082 ||| || ||||| || |||| ||||| || || |||||| | ||||| || ||||| || Sbjct 23835 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 23894 Query 170083 TGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCT 170142 ||| || || | ||| | |||| || |||| | | || || ||||| || || Sbjct 23895 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTCTGAACCT 23954 Query 170143 TCGTGCTTACGA-TTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGA 170201 ||||| || || || ||| |||||| || | ||||| |||||||| |||||||||| Sbjct 23955 ACGTGCCTATGACTTNCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGA 24014 Query 170202 CCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTG 170261 | |||||||||||||| || || || || ||||| |||| || ||| |||| || | Sbjct 24015 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAG 24074 Query 170262 ATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 |||| || ||||||||| | || ||||| || || ||||| || | || ||||| || Sbjct 24075 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 24132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574467589569960