Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22]
837 sequences; 9,013,692 total letters
Query= NC_015282.1
Length=174079
Score E
Sequences producing significant alignments: (Bits) Value
seq83 708 0.0
seq309 556 1e-153
>seq83
Length=41462
Score = 708 bits (784), Expect = 0.0
Identities = 757/991 (76%), Gaps = 8/991 (1%)
Strand=Plus/Plus
Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844
||||| | ||| | ||| ||| | ||||| || || |||| ||||| || ||| ||
Sbjct 3500 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3559
Query 163845 ATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163902
||||||||||| || ||| | ||||| ||||| || || | |||||| | |||||||
Sbjct 3560 ATGATCCCTAC-CTTATTGACGGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 3617
Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962
| || || ||||| ||||||||||||||||||||| |||| || || | || || ||||
Sbjct 3618 CTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACA 3677
Query 163963 ACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCA 164022
| || || || ||||| || |||| | || || || ||| | || || ||||| |
Sbjct 3678 ATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAA 3737
Query 164023 TTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCG 164082
| |||||||| |||||| ||||||||||| | |||||||||||||||| |||| | |
Sbjct 3738 TCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTG 3797
Query 164083 TCTTCCACTTCCTGATCGG--TATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTA 164140
| | |||||| | | || || || || |||||||||||||||||||| || |
Sbjct 3798 TTCTACACTTCTTACTTGGCGTAGCT-TGT-TACATGGGTCGTGAGTGGGAGCTTAGCTT 3855
Query 164141 CCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATC 164200
|||||| |||||||| ||||||||| |||||| || || || || |||||||| || |
Sbjct 3856 CCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 3915
Query 164201 CGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGG 164260
|||||| ||| || |||| || |||||||||| || ||||| | ||||| || ||
Sbjct 3916 CGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 3975
Query 164261 CATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCA 164320
|||||||| || ||||| | |||| | || ||||| || |||||||||||||| |||||
Sbjct 3976 AATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 4035
Query 164321 CCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCA 164380
||| || || ||| | ||||| ||||| ||||| ||||| || || |||||||| |||||
Sbjct 4036 CCCATTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 4095
Query 164381 CGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTA 164440
||||| |||| |||||| || | | |||||||| |||| ||| || || |
Sbjct 4096 TGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 4155
Query 164441 TGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTT 164500
||||||| || |||||||| |||||||| || || || || |||||||| ||||| ||
Sbjct 4156 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTT 4215
Query 164501 TGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 164560
||| || ||||||||||||| ||| ||||||||||| ||||| || |||||||||||
Sbjct 4216 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCT 4275
Query 164561 TGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATT 164620
||||| |||||||| || || |||||||| ||||| | ||| || ||| ||||| ||
Sbjct 4276 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTT 4335
Query 164621 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAA 164680
|||||| || |||||||| |||||||| || | | || ||||||||||||| | ||
Sbjct 4336 CAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAA 4395
Query 164681 CACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAA 164740
||||||||| || | ||||||| ||| || ||||||||||||||||| || |||||
Sbjct 4396 CACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 4455
Query 164741 CGCTCACAACTTCCCTCTGGATCTCGCTGCT 164771
||||| ||||||||||| || || ||||||
Sbjct 4456 TGCTCATAACTTCCCTCTAGACCTAGCTGCT 4486
>seq309
Length=37764
Score = 556 bits (616), Expect = 1e-153
Identities = 732/1006 (73%), Gaps = 8/1006 (1%)
Strand=Plus/Plus
Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265
||||||||| | | || |||||||||||||| || ||||| || || | || |||
Sbjct 23130 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGTCTATTGCTCTTT 23189
Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325
|| ||| ||| | ||| | || |||||| | || || || || || | || |||
Sbjct 23190 CCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 23249
Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAG 165383
||||| || || ||||| ||||| ||| |||| || ||||| ||||||| |||| || |
Sbjct 23250 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGCGG 23307
Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 165443
|||||||||| || | | | | ||||| | || | || ||||| ||||| || |
Sbjct 23308 TTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGGGCCTGAAGCAC 23367
Query 165444 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 165503
|||| ||||| | ||| ||| | ||||| || ||| ||||||| || ||||| |
Sbjct 23368 AAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGTTGCTCTCCATG 23427
Query 165504 GGGCTTTCGCTCTAATTGG-TTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGG 165561
| ||||| | ||||| || ||| ||| | ||||| || || | || || ||| ||
Sbjct 23428 GAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTCGATCTGTTCAA 23487
Query 165562 TATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 165621
| | | || || ||||| || || ||||||||||| || |||||||||||| || ||
Sbjct 23488 T-TGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATT 23546
Query 165622 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGC 165681
||| || || || || ||||| || ||||||| || || || ||| || || |||||
Sbjct 23547 TCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGC 23606
Query 165682 AATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCA 165741
|| || | ||| | || || | ||||| || ||||| ||||||||||| ||||||||
Sbjct 23607 TATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAACCCCTTTCA 23666
Query 165742 TATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTAC 165801
||||||||| ||||| ||| | |||| | ||| ||||| | ||||| ||||||| |||
Sbjct 23667 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTCATGGTGCTAC 23726
Query 165802 AGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTC 165861
||||| |||||| | | | |||| ||||| | ||||||||| ||| || ||| || |
Sbjct 23727 CGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCCGTGCTTTTAACCC 23786
Query 165862 TACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 165921
||||||| |||||||| || |||||||| || || ||||| || ||||| || |||||
Sbjct 23787 AACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTT 23846
Query 165922 CGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 165981
|| |||| ||| ||||| | ||||| |||||||||||| | ||||| || || |
Sbjct 23847 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 23906
Query 165982 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 166041
||| | |||| ||| | | || | | ||||| ||||| ||||| ||||| |||||
Sbjct 23907 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTCTGAACCTACGTGCCTATGA 23966
Query 166042 CTTT-GTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGA 166100
||| || || || || || | ||||| ||||| || || ||||| || |||||||| |
Sbjct 23967 CTTNCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCA 24026
Query 166101 AAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATG 166160
|||| |||||||| || |||||| |||| |||||| |||| | ||||| || ||||
Sbjct 24027 AAAATATTCTCTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATG 24086
Query 166161 AGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206
| ||| || | |||||||| || ||||| || | || ||||| ||
Sbjct 24087 AAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 24132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556918973174280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |