Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq83 473 1e-128 seq309 387 2e-102 >seq83 Length=41462 Score = 473 bits (524), Expect = 1e-128 Identities = 697/987 (71%), Gaps = 0/987 (0%) Strand=Plus/Plus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | ||| |||| ||| | ||| | |||| |||| ||||| ||||| | Sbjct 3500 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3559 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || |||| |||||||| || ||| Sbjct 3560 ATGATCCCTACCTTATTGACGGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCT 3619 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || || || || || || | ||||| ||| | || ||| | | || || ||||| Sbjct 3620 CCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAAT 3679 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || || || ||||| || |||| | || || |||||| | || || ||||| ||| Sbjct 3680 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATC 3739 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| |||| ||||||||||| ||||| |||||||||||| | | | | Sbjct 3740 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTT 3799 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||||| | | || | | |||||||| | ||||||| || | | | Sbjct 3800 CTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCGT 3859 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 | |||||| |||| ||||| ||| ||||||||||| ||||| |||| || || Sbjct 3860 CTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCA 3919 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | || ||| ||||||| || || |||||||||||||| ||||| ||| Sbjct 3920 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 3979 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || ||||| ||||| || ||| | || ||||| || ||||| ||||| || ||||| || Sbjct 3980 TCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 4039 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 || |||||| ||| || || || | || || || || ||||| || ||||| ||| Sbjct 4040 TTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 4099 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || || || || ||| | | ||||| || || || ||| ||||| || | || Sbjct 4100 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 4159 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 |||| ||||| ||||| |||||||| || || || ||||| || || ||||| ||||| Sbjct 4160 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGC 4219 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 || | |||||||| |||||| |||||||||||| | | |||||||||||||| Sbjct 4220 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCT 4279 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || ||||| ||| || | ||||| ||| || | ||||| | || ||||| |||||| Sbjct 4280 GCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAAC 4339 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACA 172719 || || |||||||| ||||||||||| || || || | | ||| | || || Sbjct 4340 CTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACACT 4399 Query 172720 TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCA 172779 |||| ||| | | ||| | || ||||| ||||||||||||||||||||| | ||||| Sbjct 4400 TGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 4459 Query 172780 CACAACTTCCCATTAGACCTTGCTTCT 172806 || |||||||| ||||||| ||| || Sbjct 4460 CATAACTTCCCTCTAGACCTAGCTGCT 4486 >seq309 Length=37764 Score = 387 bits (428), Expect = 2e-102 Identities = 709/1040 (68%), Gaps = 23/1040 (2%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || |||||||| || | || ||||| ||| Sbjct 23118 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGT 23177 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | || | || ||||||||| ||| || ||||| Sbjct 23178 CTATTGCTCTTTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTT 23237 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| || || ||| Sbjct 23238 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAATTTCTTA 23297 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 || || || || || || |||| | | | ||| | |||| || ||||| Sbjct 23298 ACTGCCGCGGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGGG 23357 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 |||||||||||||| || ||||||| ||| | || || || |||| ||||| Sbjct 23358 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGTT 23417 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGG-TTTCATGCTCCGTCAGTTTGAGATCGCAGG 173309 || | ||||||| ||||| || ||||| ||| ||| | ||||| || ||| | || | Sbjct 23418 GCTCTCCATGGAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTCG 23477 Query 173310 ACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCAC 173369 | ||| | |||||||| || ||| |||||||||||| | || || || || Sbjct 23478 ATCTGTTCAATTGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 23537 Query 173370 TAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGG 173429 | | ||| | || || |||||||| ||| |||||||||| |||||| || || Sbjct 23538 TTCTGTATTTCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGG 23597 Query 173430 TGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAA 173489 ||| ||||| || ||||| | ||| |||| | ||||| || || || || ||||| Sbjct 23598 TGTAGCAGCTATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAA 23657 Query 173490 TCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCA 173549 || ||||| |||||||| ||||| || || | || | || || ||||| |||||||| Sbjct 23658 CCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTCA 23717 Query 173550 TGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGAT 173609 |||||| || || | || || || | ||||||| ||| ||| Sbjct 23718 TGGTGCTACCGTAGAAAATACTTTATTTGAAGAC------------GGTGATGGT----- 23760 Query 173610 TCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGAT 173669 | | || ||| | || ||| | || || || | |||||||||||| ||| | Sbjct 23761 ----GCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGT 23816 Query 173670 TACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTT 173729 || || ||| | || ||||| || || ||||| | || ||||| || ||| | | || Sbjct 23817 CACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTT 23876 Query 173730 ACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGT 173789 ||| ||| | ||||| || ||||| || | ||| | |||| | | || | || Sbjct 23877 ACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGT 23936 Query 173790 AGGTCTTGCACTTAACCTTAGAGCATACGACTTT-GTATCTCAAGAGATAAGAGCAGCAG 173848 ||||| || || ||||| | || || ||||| || ||||| || || | ||||| | Sbjct 23937 CGGTCTAGCTCTGAACCTACGTGCCTATGACTTNCGTTTCTCAGGAAATTCGCGCAGCGG 23996 Query 173849 AAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAG 173908 ||||||| || || |||||||||||||| || ||||| || | || |||||||| | | Sbjct 23997 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGCG 24056 Query 173909 CATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTAC 173968 | |||||| | || |||||| || ||||| ||| | |||| || || || || ||| Sbjct 24057 CTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 24116 Query 173969 CAAGAGGTAACGCACTTTAA 173988 || | || ||||| |||||| Sbjct 24117 CACGTGGAAACGCTCTTTAA 24136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588045047514320