Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq83 612 2e-170 seq309 556 1e-153 >seq83 Length=41462 Score = 612 bits (678), Expect = 2e-170 Identities = 719/979 (73%), Gaps = 2/979 (0%) Strand=Plus/Plus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | || |||||| | |||||||| || | || ||||| || ||| ||||||||||| Sbjct 3509 TGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 3568 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || | | |||| | ||||| || || || |||||| | | ||||||||| || || Sbjct 3569 ACCTTATTGACGGCAA-CTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGA 3627 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 ||| |||||||| || ||||| ||| | || || || | || || ||||| || || || Sbjct 3628 CATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAATATTATTTC 3687 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335 ||||| || ||||| ||||| ||||| ||| | || || || || ||||||||||| Sbjct 3688 CGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGC 3747 Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395 ||| || | || || ||||| ||||| |||||||||| |||| | ||| | ||||| Sbjct 3748 GGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTT 3807 Query 167396 CCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTAT 167455 | | ||||| | | || ||||||||||||||||| || | |||||| ||||| Sbjct 3808 CTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCGTCTGGGTAT 3867 Query 167456 GCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCT 167515 ||| || ||||| ||||||||| || ||||| || || || || | || || ||| | Sbjct 3868 GCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTT 3927 Query 167516 CGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTAC 167575 |||| || |||||||||| ||| ||||| | |||||||| || ||||||||||| Sbjct 3928 GATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTAC 3987 Query 167576 ATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATAT 167635 ||||| | |||| |||| ||||| || |||||||||||||| |||||||| || || || Sbjct 3988 TTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 4047 Query 167636 GCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGT 167695 | | ||||| ||||| ||||||||||| || || |||||||| ||||| ||||| |||| Sbjct 4048 GTTAGGCGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 4107 Query 167696 TACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTT 167755 || ||| || | | |||||||| |||| ||| || || | ||||||| || Sbjct 4108 AACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATT 4167 Query 167756 CGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGAT 167815 |||||| || ||||| || ||||| ||||| || ||||||||||| || || || |||| Sbjct 4168 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGAT 4227 Query 167816 CTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCC 167875 ||||||||| || ||||||||||| || ||| | ||||||||| | || || ||||| Sbjct 4228 CTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCC 4287 Query 167876 TGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGG 167935 ||| || |||||||||| |||||||| || || Sbjct 4288 TGTAGTAGGTATCTGGTTTACCGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGG 4347 Query 167936 TTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGA 167995 |||||| |||||||| ||| | |||| ||| ||| || | |||||||| || Sbjct 4348 TTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACACTTGGGCTGA 4407 Query 167996 CGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTT 168055 | ||||||||||| || ||||||||||||||||| || ||||||||||| ||||| Sbjct 4408 TATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 4467 Query 168056 CCCTCTCGACCTTGCTGCT 168074 |||||| ||||| |||||| Sbjct 4468 CCCTCTAGACCTAGCTGCT 4486 >seq309 Length=37764 Score = 556 bits (616), Expect = 1e-153 Identities = 732/1006 (73%), Gaps = 8/1006 (1%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| |||||||||||||| || ||||| || || | || ||| Sbjct 23130 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGTCTATTGCTCTTT 23189 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| | ||| | || |||||| | || || || | || || || ||| Sbjct 23190 CCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 23249 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTGCGGCAG 168672 ||||| || || ||||| ||||| ||| |||| ||| |||| ||||||| |||| || | Sbjct 23250 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGCGG 23307 Query 168673 TTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCAC 168732 || |||||| || || | | | ||||| | || | || ||||| ||||| |||| Sbjct 23308 TTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTGTTACTATGGGGGCCTGAAGCAC 23367 Query 168733 AAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACG 168792 |||| ||||| | ||||||||| | || || || ||| ||||||| || ||||| | Sbjct 23368 AAGGAGATTTTACTCGTTGGTGTCAATTGGGGGGTCTGTGGACTTTTGTTGCTCTCCATG 23427 Query 168793 GGGCTTTCGCTCTAATCGG-TTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGG 168850 | ||||| | ||||| || ||| ||| | ||||| || || || || || ||| || Sbjct 23428 GAGCTTTTGGCCTAATAGGNTTTTATGTTACGTCAATTCGAGCTTGCTCGATCTGTTCAA 23487 Query 168851 TATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 168910 | | | || || ||||| || || ||||||||||| || |||||||||||| || || Sbjct 23488 T-TGAGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATT 23546 Query 168911 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGC 168970 ||| || || || || ||||| || ||||||| || || || ||| || || |||| Sbjct 23547 TCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGC 23606 Query 168971 AATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCA 169030 || || |||||| | || || | ||||| || ||||| ||||| |||| || ||||| Sbjct 23607 TATATTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACCTTGAACCCCTTTCA 23666 Query 169031 TATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTAC 169090 ||||||||| || || ||| | ||||| | || ||||| | ||||||||||||| ||| Sbjct 23667 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCCATTCATGGTGCTAC 23726 Query 169091 AGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAG 169150 ||||| |||||| | | | |||| ||||| |||||||| ||| || ||| || Sbjct 23727 CGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCCGTGCTTTTAACCC 23786 Query 169151 CACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 169210 ||||| | || || || ||||||||||| || || ||||| || ||||| || ||||| Sbjct 23787 AACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTT 23846 Query 169211 TGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 169270 ||| |||| || ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 23847 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 23906 Query 169271 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 169330 ||| | |||| ||| | | || | | ||||| ||||| ||||| ||||| ||||| Sbjct 23907 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTCTGAACCTACGTGCCTATGA 23966 Query 169331 CTTT-GTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCA 169389 ||| ||||| || || || | ||||| |||||||| || |||||||| |||||||||| Sbjct 23967 CTTNCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCA 24026 Query 169390 AGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATG 169449 | || || ||||| ||||||||| |||| || ||| | || || ||||| ||||||| Sbjct 24027 AAAATATTCTCTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATG 24086 Query 169450 AGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 | ||| || | ||||||||||| || || || || || || || || Sbjct 24087 AAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 24132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560602134638800